HPAPCorrPatil10x

[arschat]

Project short name:

HPAPCorrPatil10x

Primary Wrangler:

Arsenios

Secondary Wrangler:

Associated files

• Google Drive:
• Ingest: 1e618693-aa16-4414-bb11-5c8baf9a5c4d

Published study links

• Paper: 10.1038/s42255-023-00806-x and suppl methods
• Accessioned data: https://hpap.pmacs.upenn.edu

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[arschat]

Dataset is an extension of a previously wrangled and published dataset. Since this is going to be included in the Pancreas atlas (according to tracker), we will wrangle all donors in this one as well.

[arschat]

Data available for download from panc-db but we are not able to re-publish data.