GSE144469 - inflammationInducedCancerImmunotherapy

[arschat]

Project short name: inflammationInducedCancerImmunotherapy

Primary Wrangler:

Arsenios

Secondary Wrangler:

Associated files

• Google Drive: folder

Published study links

• Paper: 10.1016/j.cell.2020.06.001

• Accessioned data: GSE144469 ingest: 3373e59c-525f-4a83-8c9c-d8b280454697

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[arschat]

Message from Will:

GSE144469 - Gut Dataset

• Metadata spreadsheet
• Upload area - 798fd266-9da6-43f9-8104-396cde029fdc For some reason hca-util upload keeps failing every time I try to upload the files