Closed ESapenaVentura closed 2 years ago
This is now a HCA publication, see email:
Dear Roser
Thank you for submitting your recent paper entitled “Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro [biorxiv.org]” for consideration by the HCA Publications Committee.
Data can be found here https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10287/
Preprint is here https://www.biorxiv.org/content/10.1101/2021.01.02.425073v1
This is an MRC + WSSS dataset
We decided in a meeting that everything in the public domain is ok, so this dataset is unblocked
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10287/ is undergoing maintenance to add the new file so will work on this when available
Ready for secondary review!
Assigning self for secondary review
Hey! Just a few quick things: It doesn't have organoid data It doesn't have visium data (update later?) It doesn't have single-nuclei data (not available)
Donor organism tab:
Dissociation protocol tab:
Apart from that it looks good! Haven't been able to run the ingest-graph-validator on it so remember to do that when you create a submission with it!
@Wkt8 about your review!
Donor organism tab:
Dissociation protocol:
I'm going to create the submission!
Uploaded to ingest - No errors
Ran ingest-graph-validator: 1 error regarding analysis files, it's expected
Going to hit submit!
Looks great in the browser
Closing!
Updated metadata of 3 of the donors (E1, E2, E3) to normal
@ESapenaVentura updated and sent import form for Release 12
Update looks good in the browser
@ESapenaVentura this is now published as peer reviewed paper.
DOI: 10.1038/s41588-021-00972-2 PMID: 34857954 https://www.nature.com/articles/s41588-021-00972-2
Primary Wrangler: @ESapenaVentura
Secondary Wrangler: TBD
Associated files:
Google Drive: https://drive.google.com/drive/folders/19JgmlhKOnQFE3wtmgJ2wVa2-TGD3pASU
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