ebi-ait / hca-ebi-wrangler-central

This repo is for tracking work related to wrangling datasets for the HCA, associated tasks and for maintaining related documentation.
https://ebi-ait.github.io/hca-ebi-wrangler-central/
Apache License 2.0
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Project Catalogue: Investigate datasets belonging to "Group D" #363

Closed Wkt8 closed 3 years ago

Wkt8 commented 3 years ago

https://docs.google.com/spreadsheets/d/1d3HQLr-nMTlndM9JtM6ZlqiA73M4wk8F1r8aO_krqxA/edit#gid=1568821900

Group D consists of HCA publications that should be in Ingest and the Project Catalogue.

There are three projects:

"Single-cell multi-omics analysis of the immune response in COVID-19"

"A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2" This is not in the catalogue.

"A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cells" This is in the catalogue.

Wkt8 commented 3 years ago

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2 in Group D is a preprint of the paper

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets in Group B

Neither of them are in the catalogue.

Wkt8 commented 3 years ago

A paper from Group B is actually an HCA Publication Paper that should be in Group D. This is the paper:

Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers with DOI: 10.15252/emmm.202012871

It is not in ingest or the project catalogue.

Wkt8 commented 3 years ago

Summary of Actions Needed:

Covid-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets https://doi.org/10.1038/s41586-021-03570-8

Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers DOI: 10.15252/emmm.202012871