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ebi-ait / hca-ebi-wrangler-central

This repo is for tracking work related to wrangling datasets for the HCA, associated tasks and for maintaining related documentation.
https://ebi-ait.github.io/hca-ebi-wrangler-central/
Apache License 2.0
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Integrated single-cell transcriptomics and epigenomics reveals strong germinal center–associated etiology of autoimmune risk loci #576

Closed ami-day closed 2 years ago

ami-day commented 2 years ago

Paper: Integrated single-cell transcriptomics and epigenomics reveals strong germinal center–associated etiology of autoimmune risk loci https://www.science.org/doi/10.1126/sciimmunol.abh3768

Single-cell transcriptomics [single-cell RNA sequencing (scRNA-seq)], surface-protein profiling [single-cell antibody-derived tag sequencing (scADT-seq)], and epigenomics [single-cell assay for transposase-accessible chromatin using sequencing (scATAC-seq)] were applied to map the cellular states and gene regulatory networks of immune cells from the human tonsil, a model secondary lymphoid organ.

Google Sheet: https://docs.google.com/spreadsheets/d/1dxBnzhux4StM53OlCng3f7pTP7Z5z6IogMFL_3fASGs/edit#gid=1169161813

ami-day commented 2 years ago

Closing this ticket as just saw that Rachael is already curating this dataset (in progress status in ingest)