Deprecate old 10x ontology labels

[ESapenaVentura]

Description of the task:

For datasets ingested before the ontology labels were updated, we need to update the 10x library preparation method (before: 10x 3' v2 sequencing, now only 10x 3' v2)

List of datasets:

library_preparation_protocol.library_construction_method

• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=f8aa201c-4ff1-45a4-890e-840d63459ca2
  • library_prep_protocol_10x_H
  • library_prep_protocol_10x_M
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=577c946d-6de5-4b55-a854-cd3fde40bff2
  • library_prep_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=4a95101c-9ffc-4f30-a809-f04518a23803
  • PP001_library
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=1defdada-a365-44ad-9b29-443b06bd11d6
  • P_MTAB_76360
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=116965f3-f094-4769-9d28-ae675c1b569c
  • SingleCell3_ReagentKitv2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=abe1a013-af7a-45ed-8c26-f3793c24a1f4
  • library_preparation_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=091cf39b-01bc-42e5-9437-f419a66c8a45
  • HS_BM_P1_LibPrep1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=0b2cbf1a-3f40-4e01-a99d-901fa6091ee5
  • 10x_3p_v2_lib_prep
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=453d7ee2-319f-496c-9862-99d397870b63
  • P-MTAB-69138_v1
  • P-MTAB-69138_v2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=a72bed96-a4f7-401a-a67a-17b8a7357faf
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=fc55bd4a-8694-4a28-9a35-59a685bda323
  • 10x_library_prep_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=38449aea-70b5-40db-84b3-1e08f32efe34
  • library_prep
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=b176d756-62d8-4933-83a4-8b026380262f
  • 10x_3_v2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=c1a9a93d-d9de-4e65-9619-a9cec1052eaa
  • library_protocol_10x_5
  • library_protocol_10x_3
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=455b46e6-d8ea-4611-861e-de720a562ada
  • 10x_library_prep_protocol
  • 10x_mRNA_library_prep_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=ad98d3cd-26fb-4ee3-99c9-8a2ab085e737
  • sc_10x_3prime_v2_protocol
  • sn_10x_3prime_v2_protocol
  • sc_10x_3prime_v3_protocol
  • sn_10x_3prime_v3_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=5b5f05b7-2482-468d-b76d-8f68c04a7a47
  • Lib_preparation_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=7027adc6-c9c9-46f3-84ee-9badc3a4f53b
  • library_preparation_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=83f5188e-3bf7-4956-9544-cea4f8997756
  • 10x_v2_5p_gex_library_prep_protocol
  • 10x_v2_3p_gex_library_prep_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=f2fe82f0-4454-4d84-b416-a885f3121e59
  • 3prime_10x_protocol
  • 5prime_10x_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=c41dffbf-ad83-447c-a0e1-13e689d9b258
  • library_preparation_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=42d4f8d4-5422-4b78-adae-e7c3c2ef511c
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=95f07e6e-6a73-4e1b-a880-c83996b3aa5c
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=f48e7c39-cc67-4055-9d79-bc437892840c
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=c1810dbc-16d2-45c3-b45e-3e675f88d87b
  • P-MTAB-92514_v2_3prime
  • P-MTAB-92514_v2_5prime_gex
  • P-MTAB-92514_v3_3prime
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=e579d0f4-18ef-4d42-90fa-4d2afb60a862
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=1cd1f41f-f81a-486b-a05b-66ec60f81dcf
  • library_prep_protocol_10x
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=996120f9-e84f-409f-a01e-732ab58ca8b9
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=559bb888-7829-41f2-ace5-2c05c7eb81e9
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=41fb1734-a121-4616-95c7-3b732c9433c7
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=d3a4ceac-4d66-4984-9704-2570c0647a56
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=ce7b12ba-664f-4f79-8fc7-3de6b1892183
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=c893cb57-5c9f-4f26-9312-21b85be84313
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=3089d311-f9ed-44dd-bb10-397059bad4dc
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=07073c12-8006-4710-a00b-23abdb814904
  • library_protocol_1
  • library_protocol_2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=2a64db43-1b55-4639-aabb-8dba0145689d
  • library_preparation_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=a39728aa-70a0-4201-b0a2-81b7badf3e71
  • 10X_3p_v2_library_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=842605c7-375a-47c5-9e2c-a71c2c00fcad
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=16ed4ad8-7319-46b2-8859-6fe1c1d73a82
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=0fd8f918-62d6-4b8b-ac35-4c53dd601f71
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=0c3b7785-f74d-4091-8616-a68757e4c2a8
  • bc500c3c-dcc3-11ea-87d0-0242ac130003
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=e5d45579-1f5b-48c3-b568-320d93e7ca72
  • 10x_3_v2_library_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=5ee710d7-e2d5-4fe2-818d-15f5e31dae32
  • LP_8025374f67509ab95bdd7ddad46bf656
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=0d4b87ea-6e9e-4569-82e4-1343e0e3259f
  • 10x_illumina_lib_prep
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=24c654a5-caa5-440a-8f02-582921f2db4a
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=b51f49b4-0d2e-4cbd-bbd5-04cd171fc2fa
  • library_protocol_10X
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=a96b71c0-78a7-42d1-88ce-83c78925cfeb
  • library_prep_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=955dfc2c-a8c6-4d04-aa4d-907610545d11
  • gene_expression_prep
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=bd400331-54b9-4fcc-bff6-6bb8b079ee1f
  • snrnaseq_library_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=53c53cd4-8127-4e12-bc7f-8fe1610a715c
  • 10X_3'_v2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=962bd805-eb89-4c54-bad2-008e497d1307
  • library_prep_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=d3ac7c1b-5302-4804-b611-dad9f89c049d
  • library_protocol_1_single_cells
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=379ed69e-be05-48bc-af5e-a7fc589709bf
  • 10x_library_protocol
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=d3446f0c-30f3-4a12-b7c3-6af877c7bb2d
  • library_prep_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=7880637a-35a1-4047-b422-b5eac2a2a358
  • library_prep_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=51f02950-ee25-4f4b-8d07-59aa99bb3498
  • 10x_v2_3prime_prep
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=71436067-ac41-4ace-be1b-2fbcc2cb02fa
  • 9b260fdea46902eb928bd0a744577c61
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=d012d476-8f8c-4ff3-89d6-ebbe22c1b5c1
  • library_prep_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=faeedcb0-e046-4be7-b1ad-80a3eeabb066
  • LP_94fba566004a4f6a3d2c48d5e477176d
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=1ad6cee6-53a5-4804-a870-e5bd991186e0
  • library_prep_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=71eb5f6d-cee0-4297-b503-b1125909b8c7
  • 10x_3_v2_prep
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=e526d91d-cf3a-44cb-80c5-fd7676b55a1d
  • library_prep_1
  • library_prep_2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=3cfcdff5-dee1-4a7b-a591-c09c6e850b11
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=34cba5e9-ecb1-4d81-bf08-48987cd63073
  • library_protocol_1
  • library_protocol_2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=ad04c8e7-9b7d-4cce-b8e9-01e31da10b94
  • library_protocol_1
  • library_protocol_2
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=56e73ccb-7ae9-4fae-a738-acfb69936d7a
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=8dacb243-e918-4bd2-bb9a-aac6dc424161
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=4af795f7-3e1d-4341-b867-4ac0982b9efd
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=50151324-f3ed-4358-98af-ec352a940a61
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=a80a63f2-e223-4890-81b0-415855b89abc
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=602628d7-c038-48a8-aa97-ffbb2cb44c9d
  • library_protocol_1
• [ ] https://contribute.data.humancellatlas.org/projects/detail?uuid=65858543-530d-48a6-a670-f972b34dfe10
  • library_protocol_1

Acceptance criteria for the task:

• [x] Datasets with this issue are identified
• [ ] A correction has been sent

[Wkt8]

I think part of this is the list on https://app.zenhub.com/workspaces/dataset-wrangling-status-5f994cb88e0805001759d2e9/issues/ebi-ait/hca-ebi-wrangler-central/334