search

ebi-ait / hca-ebi-wrangler-central

This repo is for tracking work related to wrangling datasets for the HCA, associated tasks and for maintaining related documentation.
https://ebi-ait.github.io/hca-ebi-wrangler-central/
Apache License 2.0
7 stars 2 forks source link

DevelopingCerebralCortex dataset #644

Open ami-day opened 2 years ago

ami-day commented 2 years ago

Need to discuss eligibility with SCEA.

  1. cell_line -> hIPSC -> sequencing
  2. single-cell library prep. method = Fluidigm C1-based library preparation
  3. mixed sample types: primary & hIPSCs

Publication: Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex https://www.nature.com/articles/nbt.2967

Google Sheet: https://docs.google.com/spreadsheets/d/1KPZqqsCEbqUvOJDkXe55xaBB1F9iPndyo_N-yVs7Z6k/edit#gid=362761884

Priority: 1

Ingest: https://contribute.data.humancellatlas.org/projects/detail?uuid=d2801b3a-ef64-428c-93dc-93b8be0cd236&tab=project

ami-day commented 2 years ago

Assigning this dataset with E-HCAD: E-HCAD-52. Pre-converted the MAGE-TAB files and uploaded them here: https://drive.google.com/drive/folders/12cfsBdMiWjBazJz18P1TYfovnmOvhKCO

ami-day commented 2 years ago

Curated and uploaded to Gitlab: https://gitlab.ebi.ac.uk/ebi-gene-expression/scxa-metadata/-/merge_requests/298

E-HCAD-54

ami-day commented 1 year ago

It has been merged to Master but I don't see it in the SCEA browser currently