Duplications due to pluralization of "Selected Cell Type"

[theathorn]

The "Selected Cell Type" facet (cell_suspension.selected_cell_types.ontology_label/text) in the Data Browser "Tissue Type" dropdown contains pluralization of many values, resulting in duplications:

• astrocytes vs astrocyte
• common myeloid progenitor cell vs common myeloid progenitor
• dendritic cells vs dendritic cell
• hematopoietic stem cells vs hematopoietic stem cell
• monocytes vs monocyte
• natural killer cells vs natural killer cell
• neurons v neuron
• peripheral blood mononuclear cells vs peripheral blood mononuclear cell
• Plasma cell vs plasma cell (capitalization should be removed)

Acceptance criteria for the task:

• Remove pluralization from all terms thus removing the duplications

[ESapenaVentura]

Needs triaging

[willrockout]

@ESapenaVentura doesn't ingest check the label to the id? Why is it giving a pass with the plural version if the looked-up term isn't plural?

[ESapenaVentura]

@willrockout I don't think ingest checks label <--> ontology ID, but I will check with the developers. In any case, the .text is definitively not checked, because we agreed that that is a free string text where the contributor can input the metadata as they please

@theathorn I thought the browser only took the ontology label field when available? (And ignored the .text) Was it not available for these datasets?

[theathorn]

@ESapenaVentura Azul first checks for the cell_type_ontology.ontology_label and, if not present, falls back to the cell_type_ontology.text field. So either the ontology_labels are inconsistent or are not present.

[ofanobilbao]

This is not really stalled. It has simply not been prioritised just yet. Moving to the Backlog