Open idazucchi opened 2 years ago
We are setting up a follow up meeting with the skin atlas team and possibly one with Hao to discuss the metadata format
I'm sending the metadata spreadsheets that are ready to Maria so that she can start working on them and use as starting point to request additional metadata from the authors
We should have another 2 ready in the next few days hopefully - ami's and mine
Based on the paper A Roadmap for a Consensus Human Skin Cell Atlas and Single-Cell Data Standardization, an update on the publication list and the metadata can be done.
Metadata in Supplementary Table 2 (download) are identical to ES comparisson done here with only difference being:
study_ID
is added with the DOI of the publicationskin_disorders
renamed to skin_disorder
and skin_disorder_type
is removedNA (not available)
option.skin_disorders
is mentioned as know_skin_disease
Out of the 40 publications listed, there are 13 already in DCP, and 8 in ingest.
Bionetwork Spreadsheet Updated with the new projects from Roadmap Atlas paper. https://docs.google.com/spreadsheets/d/129T_QsKKCqJmPiwuK9qLl7uxASUplI84At6ewu2vwLA/edit#gid=1334414990
All projects are on ingest, and for some we need to contact the authors (i.e. 1, 2, 3)
Status | Count |
---|---|
Published in DCP | 15 |
Submitted | 1 |
In Progress | 0 |
Stalled | 3 |
Eligible | 21 |
TOTAL | 40 |
There is one lattice project that on ingest is labeled as submitted
but there is no submission at all (on dcp, in import request form, or on ingest).
Context: Following the general HCA meetings in June 2022 (see here) we decided to work directly with the organ Bionetworks to support them as they assemble the first drafts of organ atlases. Gabs first got in touch with the skin bionetwork and this will be an opportunity to figure out how we can work with the bionetworks, figure out what they need and how we can help.
Description of the task: to be expanded / make tickets as we take on the tasks
Link to spreadsheet here.
Acceptance criteria for the task: