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ebi-ait / hca-to-scea-tools

Helpers and tools to assist in the conversion of HCA datasets into SCEA
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Enhancement: organoid datasets #70

Closed ami-day closed 2 years ago

ami-day commented 2 years ago

We should convert HCA organoid datasets to SCEA MAGE-TAB. The hca-to-scea does not currently take organoid datasets as a given input. Need to add functionality to account for cell line -> iPSC -> organoid -> sequencing experiments, using an existing organoid SCEA dataset as a guide.

Example: https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-5/experiment-design

ami-day commented 2 years ago

Done.