ebi-ait / ingest-graph-validator

HCA Ingest Service Graph Validation Suite
MIT License
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Improve smartseq2_has_2-3_files to allow 1 fastq if the sequencing is single ended #62

Closed idazucchi closed 2 years ago

idazucchi commented 2 years ago

Describe the bug The graph validator raises the smartseq2_has_2-3_files error even if the sequencing is single-ended

To Reproduce Steps to reproduce the behavior:

  1. Upload a submission in ingest with:

    • Library preparation: SmartSeq2
    • Sequencing protocol: single end
    • One fastq file per plate well
  2. Click on Validate submission

  3. See error

Desired behavior For SmartSeq2 if the sequencing is single-ended the graph validator should allow to have one fastq per process, without raising an error.

Already discussed with @ESapenaVentura

ofanobilbao commented 2 years ago

Blocking https://app.zenhub.com/workspaces/dataset-wrangling-status-5f994cb88e0805001759d2e9/issues/ebi-ait/hca-ebi-wrangler-central/535