Closed egonw closed 1 year ago
In BridgeDb I get a warning that the following KEGG Compound identifiers have an unexpected format. I tried two, and indeed neither worked. The full list is:
$ head -1 ~/Downloads/chebi_database_accession.tsv ID COMPOUND_ID SOURCE TYPE ACCESSION_NUMBER $ grep "C-" ~/Downloads/chebi_database_accession.tsv | grep "KEGG COMPOUND" 1057058 169879 KEGG COMPOUND KEGG COMPOUND accession C-1079 1066416 173370 KEGG COMPOUND KEGG COMPOUND accession C-1041 1066419 173371 KEGG COMPOUND KEGG COMPOUND accession C-5141 1076346 177030 KEGG COMPOUND KEGG COMPOUND accession C-8853 1076129 176967 KEGG COMPOUND KEGG COMPOUND accession C-4569 1073463 176440 KEGG COMPOUND KEGG COMPOUND accession C-4561 1077513 177494 KEGG COMPOUND KEGG COMPOUND accession C-8875 1078805 177923 KEGG COMPOUND KEGG COMPOUND accession C-8514 1088629 182011 KEGG COMPOUND KEGG COMPOUND accession C-4179 1081362 179151 KEGG COMPOUND KEGG COMPOUND accession C-1689 1081564 179249 KEGG COMPOUND KEGG COMPOUND accession C-5011 1087520 180996 KEGG COMPOUND KEGG COMPOUND accession C-1031 1083262 179946 KEGG COMPOUND KEGG COMPOUND accession C-5116 1088057 181462 KEGG COMPOUND KEGG COMPOUND accession C-1160 1090745 183289 KEGG COMPOUND KEGG COMPOUND accession C-5733 1085610 180552 KEGG COMPOUND KEGG COMPOUND accession C-6045 1106176 191088 KEGG COMPOUND KEGG COMPOUND accession C-9227 1102416 189210 KEGG COMPOUND KEGG COMPOUND accession C-8660 1115526 194669 KEGG COMPOUND KEGG COMPOUND accession C-5242
These KEGG accessions came from the MetaboLights database. I have now removed all of the above KEGG accessions. Thank you.
thank!
In BridgeDb I get a warning that the following KEGG Compound identifiers have an unexpected format. I tried two, and indeed neither worked. The full list is: