search

ebi-chebi / ChEBI

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds.
https://www.ebi.ac.uk/chebi
Creative Commons Attribution 4.0 International
42 stars 10 forks source link

Bile salt metabolites #858

Closed muthuvenkat closed 8 years ago

muthuvenkat commented 16 years ago

Dear colleague, I wish to submit a list of bile salt metabolites. Please find attached an excel file containing the names and refs to the .pdfs attached (separately). Most, if not all of these metabolites have no KEGG or PubChem IDs.

Please check 7a 3-1 and 7a 3-3 on the .xls list as I have found some Chebi IDs that could match them (15494 and 27458 resp.).

Again, please look at the review from David Russell's paper "The enzymes, regulation, and genetics of bile acid synthesis". Annu. Rev. Biochem. 2003. 72:137-174, PubMed ID 12543708

The .pdfs are based on this paper.

Regards Bijay

Reported by: *anonymous

muthuvenkat commented 16 years ago

Excel file containing name, ref attached pdfs and Reactome ID

Original comment by: nobody

muthuvenkat commented 16 years ago

Logged In: YES user_id=1422948 Originator: NO

Hi Marcus, I will send you the pdfs to your email, there is no facility to attach more than one file (or is there???).

Regards, Bijay

Original comment by: beej160

muthuvenkat commented 16 years ago

Logged In: YES user_id=1174860 Originator: NO

Hi Bijay

ChEBI IDs corresponding to the names and Reactome IDs which you supplied are given below. Note that 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA (Reactome ID 193422) was included in your list twice. All entries will become public at the next release, scheduled for March 26.

Regards Marcus

3alpha,7alpha-dihydroxy-5beta-cholestanoyl-CoA 193442 CHEBI:15494 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA 192342 CHEBI:27505 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA 193422 CHEBI:27458

5beta-cholestan-7alpha,24-diol-3-one 193760 CHEBI:48698 5beta-cholestan-3alpha,7alpha,24-triol 192030 CHEBI:48700 4-cholesten-7alpha,24-diol-3-one 193724 CHEBI:48701 4-cholesten-7alpha,12alpha,24-triol-3-one 193745 CHEBI:48714 5beta-cholestan-7alpha,12alpha,24-triol-3-one 193707 CHEBI:48715 5beta-cholestan-3alpha,7alpha,12alpha,24-tetrol 193728 CHEBI:48728

5beta-cholestan-3alpha,7alpha,24,27-tetrol 193708 CHEBI:48731 5beta-cholestan-3alpha,7alpha,12alpha,24,27-pentol 193782 CHEBI:48732 3alpha,7alpha,24-trihydroxy-5beta-cholestan-27-al 193716 CHEBI:48734 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-27-al 193785 CHEBI:48735 3alpha,7alpha,24-trihydroxy-5beta-cholestanoic acid 193757 CHEBI:48736 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoic acid 193747 CHEBI:48742 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA 193422 CHEBI:27458

5beta-cholestan-7alpha,26-diol-3-one 193830 CHEBI:48778 5beta-cholestan-3alpha,7alpha,26-triol 193842 CHEBI:28540 4-cholesten-7alpha,26-diol-3-one 193724 CHEBI:48825 4-cholesten-7alpha,12alpha,26-triol-3-one 193745 CHEBI:48833 5beta-cholestan-7alpha,12alpha,26-triol-3-one 193707 CHEBI:48834

Original comment by: mennis

muthuvenkat commented 16 years ago

Original comment by: mennis