Open ke4 opened 5 months ago
We need to able to load the experiment design data for each experiments to the PostgreSQL database. ~~For that purpose we can use a script from the db-scxa repository: https://github.com/ebi-gene-expression-group/db-scxa/blob/develop/bin/load_exp_design.sh. We have a tested example in our single cell repo: https://github.com/ebi-gene-expression-group/atlas-web-single-cell/blob/092fea1d41f4075fc66225d3359f23173fc7141a/docker/prepare-dev-environment/postgres/docker-compose.yml#L55 We could reuse that.~~
db-scxa
single cell repo
In bulk we are handling database population differently than in scxa. We are doing that via our application's admin endpoint: We are using this endpoint for DB operations: http://$TOMCAT_HOST/gxa/admin/experiments/${expAcc}/${WEB_APP_CALL} where
bulk
scxa
import_public
coexpression_update
Tasks:
load_exp_design.sh
exp_design_column
exp_design
We need to able to load the experiment design data for each experiments to the PostgreSQL database. ~~For that purpose we can use a script from the
db-scxarepository: https://github.com/ebi-gene-expression-group/db-scxa/blob/develop/bin/load_exp_design.sh. We have a tested example in oursingle cell repo: https://github.com/ebi-gene-expression-group/atlas-web-single-cell/blob/092fea1d41f4075fc66225d3359f23173fc7141a/docker/prepare-dev-environment/postgres/docker-compose.yml#L55 We could reuse that.~~In
bulkwe are handling database population differently than inscxa. We are doing that via our application's admin endpoint: We are using this endpoint for DB operations: http://$TOMCAT_HOST/gxa/admin/experiments/${expAcc}/${WEB_APP_CALL} whereimport_publicorcoexpression_updateTasks:
AddAdd experiment design table(s) population into that above endpointload_exp_design.shshell script into the relevant docker compose fileexp_design_columnandexp_design) has been populated