Always generate mito stats, even if not filtering by mito stats

ebi-gene-expression-group / scanpy-scripts

Scripts for using scanpy

Apache License 2.0

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Always generate mito stats, even if not filtering by mito stats #104

Closed pinin4fjords closed 3 years ago

pinin4fjords commented 3 years ago

Currently, we only get the mito stats (pct_counts_mito etc) if we're actually using those in filtering. This makes it so those stats are added whenever we have the mito column in .var.

pcm32 commented 3 years ago

Any scenario where forcing this might be inconvenient?

pinin4fjords commented 3 years ago

Any scenario where forcing this might be inconvenient?

All it's doing is adding a column or two to .obs, pretty innocuous IMO.

nh3 commented 3 years ago

Sounds fine to me.

pinin4fjords commented 3 years ago

Thanks guys