Feature/gzip mtx output

ebi-gene-expression-group / scanpy-scripts

Scripts for using scanpy

Apache License 2.0

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Closed pinin4fjords closed 2 years ago

pinin4fjords commented 2 years ago

This PR:

Adds the option for compressed output on the mtx export, leveraging features of the Pandas library.
Adds a corresponding test
Moves unit tests to occur before integration tests.

I've checked that the mtx export is still readable by e.g. dropletUtils.

irisdianauy commented 2 years ago

LGTM, and the code is easy to understand.

pinin4fjords commented 2 years ago

Thanks for the review @irisdianauy