pcm32
commented
5 months ago These were the exact versions used, in case any pinning is needed later:
Transaction
Prefix: /home/runner/micromamba-root/envs/scanpy-scripts
Updating specs:
- python=3.9
- scanpy=1.9.3
- louvain
- igraph
- leidenalg
- loompy
- Click[version='<8']
- harmonypy[version='>=0.0.5']
- bbknn[version='>=1.5.0,<1.6.0']
- mnnpy[version='>=0.1.9.5']
- scipy[version='<1.9.0']
- scikit-learn[version='<1.3.0']
- scrublet
- fa2
- bats
- black
- pytest
Package Version Build Channel Size
──────────────────────────────────────────────────────────────────────────────────────
Install:
──────────────────────────────────────────────────────────────────────────────────────
+ bats 0.4.0 1 bioconda 11kB
+ _libgcc_mutex 0.1 conda_forge conda-forge 3kB
+ python_abi 3.9 4_cp39 conda-forge 6kB
+ libstdcxx-ng 13.2.0 h7e041cc_5 conda-forge 4MB
+ ld_impl_linux-64 2.40 h41732ed_0 conda-forge 705kB
+ ca-certificates 2024.2.2 hbcca054_0 conda-forge 155kB
+ libgomp 13.2.0 h807b86a_5 conda-forge 420kB
+ _openmp_mutex 4.5 2_gnu conda-forge 24kB
+ libgcc-ng 13.2.0 h807b86a_5 conda-forge 771kB
+ libzopfli 1.0.3 h9c3ff4c_0 conda-forge 168kB
+ xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge 19kB
+ pthread-stubs 0.4 h36c2ea0_1001 conda-forge 6kB
+ c-ares 1.26.0 hd590300_0 conda-forge 1kB
+ libev 4.33 hd590300_2 conda-forge 113kB
+ rav1e 0.6.6 he8a937b_2 conda-forge 15MB
+ keyutils 1.6.1 h166bdaf_0 conda-forge 118kB
+ svt-av1 1.8.0 h59595ed_0 conda-forge 3MB
+ dav1d 1.2.1 hd590300_0 conda-forge 760kB
+ aom 3.8.1 h59595ed_0 conda-forge 3MB
+ libaec 1.1.2 h59595ed_1 conda-forge 35kB
+ zlib-ng 2.0.7 h0b41bf4_0 conda-forge 95kB
+ lz4-c 1.9.4 hcb278e6_0 conda-forge 143kB
+ jxrlib 1.1 hd590300_3 conda-forge 239kB
+ giflib 5.2.1 h0b41bf4_3 conda-forge 77kB
+ libiconv 1.17 hd590300_2 conda-forge 706kB
+ zfp 1.0.1 h59595ed_0 conda-forge 278kB
+ snappy 1.1.10 h9fff704_0 conda-forge 39kB
+ charls 2.4.2 h59595ed_0 conda-forge 150kB
+ libgfortran5 13.2.0 ha46dd_5 conda-forge 1MB
+ libbrotlicommon 1.1.0 hd590300_1 conda-forge 69kB
+ icu 73.2 h59595ed_0 conda-forge 12MB
+ xorg-libxau 1.0.11 hd590300_0 conda-forge 14kB
+ libdeflate 1.19 hd590300_0 conda-forge 67kB
+ lerc 4.0.0 h27087fc_0 conda-forge 282kB
+ libjpeg-turbo 3.0.0 hd590300_1 conda-forge 619kB
+ openssl 3.2.1 hd590300_0 conda-forge 3MB
+ libxcrypt 4.4.36 hd590300_1 conda-forge 100kB
+ libzlib 1.2.13 hd590300_5 conda-forge 62kB
+ libffi 3.4.2 h7f98852_5 conda-forge 58kB
+ bzip2 1.0.8 hd590300_5 conda-forge 254kB
+ ncurses 6.4 h59595ed_2 conda-forge 884kB
+ libwebp-base 1.3.2 hd590300_0 conda-forge 402kB
+ gmp 6.3.0 h59595ed_0 conda-forge 563kB
+ libuuid 2.38.1 h0b41bf4_0 conda-forge 34kB
+ libnsl 2.0.1 hd590300_0 conda-forge 33kB
+ xz 5.2.6 h166bdaf_0 conda-forge 418kB
+ libavif16 1.0.4 h1dcd450_0 conda-forge 94kB
+ libgfortran-ng 13.2.0 h69a702a_5 conda-forge 24kB
+ libbrotlienc 1.1.0 hd590300_1 conda-forge 283kB
+ libbrotlidec 1.1.0 hd590300_1 conda-forge 33kB
+ libxcb 1.15 h0b41bf4_0 conda-forge 384kB
+ libnghttp2 1.58.0 h47da74e_1 conda-forge 632kB
+ libssh2 1.11.0 h0841786_0 conda-forge 271kB
+ libllvm14 14.0.6 hcd5def8_4 conda-forge 31MB
+ libpng 1.6.42 h2797004_0 conda-forge 289kB
+ zstd 1.5.5 hfc55251_0 conda-forge 545kB
+ tk 8.6.13 noxft_h4845f30_101 conda-forge 3MB
+ libsqlite 3.44.2 h2797004_0 conda-forge 846kB
+ libedit 3.1.20191231 he28a2e2_2 conda-forge 124kB
+ readline 8.2 h8228510_1 conda-forge 281kB
+ glpk 5.0 h445213a_0 conda-forge 1MB
+ libxml2 2.12.5 h232c23b_0 conda-forge 705kB
+ libopenblas 0.3.25 pthreads_h413a1c8_0 conda-forge 6MB
+ brotli-bin 1.1.0 hd590300_1 conda-forge 19kB
+ freetype 2.12.1 h267a509_2 conda-forge 635kB
+ c-blosc2 2.13.2 hb4ffafa_0 conda-forge 337kB
+ blosc 1.21.5 h0f2a231_0 conda-forge 49kB
+ libtiff 4.6.0 ha9c0a0a_2 conda-forge 283kB
+ krb5 1.21.2 h9d440_0 conda-forge 1MB
+ libhwloc 2.9.3 default_h554bfaf_1009 conda-forge 3MB
+ libblas 3.9.0 20_linux64_openblas conda-forge 14kB
+ brotli 1.1.0 hd590300_1 conda-forge 19kB
+ openjpeg 2.5.0 h488ebb8_3 conda-forge 357kB
+ lcms2 2.16 hb7c19ff_0 conda-forge 245kB
+ libcurl 8.5.0 hca28451_0 conda-forge 389kB
+ tbb 2021.11.0 h00ab1b0_1 conda-forge 196kB
+ libcblas 3.9.0 20_linux64_openblas conda-forge 14kB
+ liblapack 3.9.0 20_linux64_openblas conda-forge 14kB
+ brunsli 0.1 h9c3ff4c_0 conda-forge 205kB
+ hdf5 1.14.3 nompi_h4f84152_100 conda-forge 4MB
+ arpack 3.8.0 nompi_h0baa96a_101 conda-forge 219kB
+ igraph 0.10.9 h153f77b_0 conda-forge 1MB
+ libleidenalg 0.11.1 h00ab1b0_0 conda-forge 83kB
+ tzdata 2024a h0c530f3_0 conda-forge 120kB
+ python 3.9.18 h0755675_1_cpython conda-forge 24MB
+ wheel 0.42.0 pyhd8ed1ab_0 conda-forge 58kB
+ setuptools 69.0.3 pyhd8ed1ab_0 conda-forge 471kB
+ pip 24.0 pyhd8ed1ab_0 conda-forge 1MB
+ texttable 1.7.0 pyhd8ed1ab_0 conda-forge 20kB
+ cached_property 1.5.2 pyha770c72_1 conda-forge 11kB
+ munkres 1.1.4 pyh9f0ad1d_0 conda-forge 12kB
+ pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge 90kB
+ cycler 0.12.1 pyhd8ed1ab_0 conda-forge 13kB
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge 161kB
+ pytz 2024.1 pyhd8ed1ab_0 conda-forge 189kB
+ python-tzdata 2023.4 pyhd8ed1ab_0 conda-forge 146kB
+ lazy_loader 0.3 pyhd8ed1ab_0 conda-forge 14kB
+ threadpoolctl 3.2.0 pyha21a80b_0 conda-forge 21kB
+ typing_extensions 4.9.0 pyha770c72_0 conda-forge 36kB
+ platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge 20kB
+ pathspec 0.12.1 pyhd8ed1ab_0 conda-forge 41kB
+ mypy_extensions 1.0.0 pyha770c72_0 conda-forge 10kB
+ dataclasses 0.8 pyhc8e2a94_3 conda-forge 10kB
+ stdlib-list 0.10.0 pyhd8ed1ab_0 conda-forge 26kB
+ array-api-compat 1.4.1 pyhd8ed1ab_0 conda-forge 29kB
+ zipp 3.17.0 pyhd8ed1ab_0 conda-forge 19kB
+ six 1.16.0 pyh6c4a22f_0 conda-forge 14kB
+ tomli 1.2.2 pyhd8ed1ab_0 conda-forge 16kB
+ iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge 11kB
+ exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge 21kB
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge 25kB
+ networkx 3.2 pyhd8ed1ab_0 conda-forge 1MB
+ natsort 8.4.0 pyhd8ed1ab_0 conda-forge 37kB
+ joblib 1.3.2 pyhd8ed1ab_0 conda-forge 221kB
+ packaging 23.2 pyhd8ed1ab_0 conda-forge 49kB
+ pluggy 1.4.0 pyhd8ed1ab_0 conda-forge 23kB
+ click 7.1.2 pyh9f0ad1d_0 conda-forge 65kB
+ cached-property 1.5.2 hd8ed1ab_1 conda-forge 4kB
+ session-info 1.0.0 pyhd8ed1ab_0 conda-forge 12kB
+ importlib_resources 6.1.1 pyhd8ed1ab_0 conda-forge 30kB
+ importlib-metadata 7.0.1 pyha770c72_0 conda-forge 26kB
+ python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge 246kB
+ tqdm 4.1 pyhd8ed1ab_0 conda-forge 89kB
+ pytest 8.0.0 pyhd8ed1ab_0 conda-forge 252kB
+ importlib-resources 6.1.1 pyhd8ed1ab_0 conda-forge 10kB
+ importlib_metadata 7.0.1 hd8ed1ab_0 conda-forge 10kB
+ numpy 1.24.4 py39h6183b62_0 conda-forge 7MB
+ unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge 374kB
+ kiwisolver 1.4.5 py39h7633fee_1 conda-forge 73kB
+ pillow 10.2.0 py39had0adad_0 conda-forge 42MB
+ typed-ast 1.5.5 py39hd1e30aa_1 conda-forge 199kB
+ llvmlite 0.42.0 py39h174d805_1 conda-forge 3MB
+ python-annoy 1.17.2 py39h3d64e_1 conda-forge 67kB
+ python-igraph 0.11.3 py39h007bc96_1 conda-forge 1MB
+ imagecodecs 2024.1.1 py39hf9b8f0e_0 conda-forge 2MB
+ contourpy 1.2.0 py39h7633fee_0 conda-forge 238kB
+ pywavelets 1.4.1 py39h44dd56e_1 conda-forge 4MB
+ h5py 3.10.0 nompi_py39h2c511df_101 conda-forge 1MB
+ pandas 2.2.0 py39hddac248_0 conda-forge 13MB
+ scipy 1.8.1 py39hddc5342_3 conda-forge 26MB
+ fonttools 4.48.1 py39hd1e30aa_0 conda-forge 2MB
+ numba 0.59.0 py39h615d6bd_1 conda-forge 4MB
+ leidenalg 0.10.2 py39h3d6467e_0 conda-forge 80kB
+ louvain 0.8.1 py39h3d6467e_1 conda-forge 102kB
+ fa2 0.3.5 py39hb9d7c_2 conda-forge 95kB
+ scikit-learn 1.2.2 py39hc236052_2 conda-forge 8MB
+ matplotlib-base 3.8.2 py39he9076e7_0 conda-forge 7MB
+ numpy_groupies 0.10.2 pyhd8ed1ab_0 conda-forge 37kB
+ patsy 0.5.6 pyhd8ed1ab_0 conda-forge 187kB
+ imageio 2.33.1 pyh8c1a49c_0 conda-forge 291kB
+ black 21.12b0 pyhd8ed1ab_0 conda-forge 125kB
+ tifffile 2024.1.30 pyhd8ed1ab_0 conda-forge 177kB
+ anndata 0.10.5.post1 pyhd8ed1ab_0 conda-forge 98kB
+ pynndescent 0.5.11 pyhca85f_0 conda-forge 49kB
+ seaborn-base 0.13.2 pyhd8ed1ab_0 conda-forge 234kB
+ loompy 3.0.6 py_0 conda-forge 41kB
+ harmonypy 0.0.9 pyhdfdaf_0 bioconda 30kB
+ statsmodels 0.14.1 py39h44dd56e_0 conda-forge 11MB
+ scikit-image 0.22.0 py39hddac248_2 conda-forge 11MB
+ umap-learn 0.5.5 py39hf3d152e_1 conda-forge 139kB
+ mnnpy 0.1.9.5 py39hf95cd2a_8 bioconda 105kB
+ bbknn 1.5.1 py39hbf8eff0_2 bioconda 24kB
+ seaborn 0.13.2 hd8ed1ab_0 conda-forge 7kB
+ scanpy 1.9.3 pyhd8ed1ab_0 conda-forge 2MB
+ scrublet 0.2.3 pyh5e36f6f_1 bioconda 20kB
Summary:
Install: 165 packages
There were some extra pinnings that given that we are not supporting mmnpy we don't need anymore.