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ebi-gene-expression-group / scxa-workflows

Higher level repo for aggregating all of Atlas workflow logic for Single Cell
Apache License 2.0
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Add submission script #1

Closed pinin4fjords closed 5 years ago

pinin4fjords commented 5 years ago

This adds the small control script that submits https://github.com/ebi-gene-expression-group/scxa-control-workflow, via a cron job.

That workflow does most of the work in coordinating quantification work across experiments. This script just makes sure the most recent version of the component workflows have been downloaded, and where a workflow session completes without error, tidies up the Nextflow working directory.

pcm32 commented 5 years ago

should we put this inside a w_*_quantification directory?

pinin4fjords commented 5 years ago

Well, this is a generic control thing not specific to a technology. What w_ prefix would we give it?

pinin4fjords commented 5 years ago

Script moved to subdir @pcm32 - all good?

pinin4fjords commented 5 years ago

@pcm32 I'm going to merge this while you're away since I want to use it in production. We can tweak later.