Add docker containerization and basic end to end tests and continuous integration.

[LeeBergstrand]

Hi All,

I have been going back and forth with Silas Kieser about issue https://github.com/ebi-pf-team/genome-properties/issues/44 (offline use of genome properties). The way I was getting around the Perl installation issues was through the use of a docker container. I added code for this in my fork.

Updates in my fork.

• Docker Containerization
  • Added Dockerfile with instructions for generating a genome properties container.
  • Added a shell wrapper for running genome properties assignments inside a container.
• Added a cpanfile which lists the Perl dependencies and there versions.
  • This file can be used with cpanm to auto install these dependencies from the file.
  • cpanm --installdeps ./code/
• I was interested in finding the minimum amount for InterProScan5 databases that could be used to assign genome properties so I added a shell script to find this.
• I added travis-ci.yml file to allow for continuous integration. Right now it runs the assignment script on an InterProScan TSV to make sure we don't have any breaking errors.
  • https://travis-ci.org/Micromeda/genome-properties

I would like for these changes to be merged into the root genome properties repo. I would love your feedback.

[rdfinn]

Thanks @LeeBergstrand for the contribution. Merged on to rel3.0 branch as this contains data changes as well.