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ebi-pf-team / interproscan

Genome-scale protein function classification
Apache License 2.0
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OSError: [Errno 8] Exec format error: 'bin/hmmer/hmmer3/3.3/hmmpress' #252

Closed RinaYona closed 4 months ago

RinaYona commented 2 years ago

Hi,

After installing InterProScan, I put the command $ python3 initial_setup.py, and the error was displayed as following.

Checking any hmm models that need indexing ... this may take a few minutes Traceback (most recent call last): File "initial_setup.py", line 75, in run_hmmpress(hmmpress33_path, hmmpress_force, hmms_path.strip()) File "initial_setup.py", line 55, in run_hmmpress call([hmmpress_path, hmms_path]) File "/usr/lib/python3.8/subprocess.py", line 340, in call with Popen(*popenargs, **kwargs) as p: File "/usr/lib/python3.8/subprocess.py", line 858, in init self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1704, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) OSError: [Errno 8] Exec format error: 'bin/hmmer/hmmer3/3.3/hmmpress'

Please let me know any idea.

matthiasblum commented 2 years ago

Hi @RinaYona ,

What happens if you run bin/hmmer/hmmer3/3.3/hmmpress?

leili-plantmicrobe commented 2 years ago

Hi @matthiasblum , I also got the similar error when run python3 initial_setup.py.

Checking any hmm models that need indexing ... this may take a few minutes Traceback (most recent call last): File "/Users/lilei/Desktop/RGAugury/interproscan/interproscan-5.56-89.0/initial_setup.py", line 75, in run_hmmpress(hmmpress33_path, hmmpress_force, hmms_path.strip()) File "/Users/lilei/Desktop/RGAugury/interproscan/interproscan-5.56-89.0/initial_setup.py", line 55, in run_hmmpress call([hmmpress_path, hmms_path]) File "/Users/lilei/opt/miniconda3/lib/python3.9/subprocess.py", line 349, in call with Popen(*popenargs, **kwargs) as p: File "/Users/lilei/opt/miniconda3/lib/python3.9/subprocess.py", line 951, in init self._execute_child(args, executable, preexec_fn, close_fds, File "/Users/lilei/opt/miniconda3/lib/python3.9/subprocess.py", line 1821, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) OSError: [Errno 8] Exec format error: 'bin/hmmer/hmmer3/3.3/hmmpress'

when i run "bin/hmmer/hmmer3/3.3/hmmpress" it is "zsh: exec format error: bin/hmmer/hmmer3/3.3/hmmpress"

I am new in using this. Thanks a lot!

matthiasblum commented 2 years ago

Hi @leili-plantmicrobe,

It looks like your operating system is macOS. Is this the case? InterProScan is only supported on Linux systems, as included binaries (such as hmmpress) were compiled for Linux.