matthiasblum
commented
1 year ago Hi,
This means the operating system killed the process with PID 668576. In my experience, the common reason for the OS to kill InterProScan is that your system is running out of memory. How much memory do you have on the machine running InterProScan?
Hi, I keep getting this error when my run is around 85% done but I don't know what it means or what is wrong
dylanmiguelsmith@DESKTOP-NC5Q46Q:/mnt/c/Users/dysm3/my_interproscan/interproscan-5.61-93.0$ ./interproscan.sh -appl TIGRFAM -i capricolum.faa 24/04/2023 16:00:45:666 Welcome to InterProScan-5.61-93.0 24/04/2023 16:00:45:667 Running InterProScan v5 in STANDALONE mode... on Linux 24/04/2023 16:01:00:543 RunID: DESKTOP-NC5Q46Q_20230424_160059366_j4su 24/04/2023 16:01:39:186 Loading file /mnt/c/Users/dysm3/my_interproscan/interproscan-5.61-93.0/capricolum.faa 24/04/2023 16:01:39:518 Running the following analyses: [TIGRFAM-15.0] Available matches will be retrieved from the pre-calculated match lookup service. Matches for any sequences that are not represented in the lookup service will be calculated locally. 24/04/2023 16:02:07:706 85% completed ./interproscan.sh: line 61: 668576 Killed "$JAVA" -XX:ParallelGCThreads=8 -Xms2028M -Xmx9216M $PROPERTY -jar interproscan-5.jar $@ -u $USER_DIR
That last part where it says line 61: ####### Killed has come up before too when I was running the test case but that works now after I ran this line.
sudo apt-get install elfutils
Thanks for any help!