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ebi-pf-team / interproscan

Genome-scale protein function classification
Apache License 2.0
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Issues with glibc? #33

Closed wonaya closed 7 years ago

wonaya commented 7 years ago

Hi, I am getting following error when running 5-24.63 Tried with previous versions, and it seems to occur from 5-20-59 version. 

03/08/2017 11:32:19:066 50% completed
2017-08-03 11:32:24,005 [amqEmbeddedWorkerJmsContainer-1] [uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep:188] ERROR - Command line failed with exit code: 1
Command: bin/gene3d/4.1.0/cath-resolve-hits --input-format=hmmer_domtmblout --output-file /tmp/c442-904.stampede.tacc.utexas.edu_20170803_112325528_bdp0//jobGene3d/000000000001_000000000359_one.raw.out /tmp/c442-904.stampede.tacc.utexas.edu_20170803_112325528_bdp0//jobGene3d/000000000001_000000000359.raw.domtblout.out 
Error output from binary:
bin/gene3d/4.1.0/cath-resolve-hits: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by bin/gene3d/4.1.0/cath-resolve-hits)
philippbayer commented 7 years ago

Just stumbled over this as well and found a solution, there are different binaries for cath-resolve-hits here:

https://github.com/UCLOrengoGroup/cath-tools/releases

I replaced my interproscan's bin/gene3d/4.1.0/cath-resolve-hits with the centOS version on that page and that fixed it. See the FAQ