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ebi-pf-team / interproscan

Genome-scale protein function classification
Apache License 2.0
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Custom database path #337

Closed mesti90 closed 1 year ago

mesti90 commented 1 year ago

I'd like to install interproscan in a singularity container. My goal is to install only the software, and in another step download the database to the server. For this I should be able to feed interproscan a custom database path. Is it possible? So interproscan.sh would be found in /usr/bin, and the ./data folder e.g. in /home/user/interpro/data

matthiasblum commented 1 year ago

Hi @mesti90,

We already provide a Docker image (https://hub.docker.com/r/interpro/interproscan/), which you can use with Singularity.

This image expects the data directory to be in /opt/interproscan/data. You can bind paths to bind the path outside the container to /opt/interproscan/data.