Superfamily and SSD original data files (HMM profiles) contain duplicated NAME / ACC values.
This was not an issue in hmmer 3.1b2 but is in hmmer 3.3+.
For that reason the 2 hmmer versions where in use by interproscan, but the problem would arise when using containers due to only a recent hmmer binary being used.
The source data files where edited to in the case of Superfamily include virtual versions to the ACC (1234.5), and in the case on SFLD the NAME (name$2). Interproscan will ignore from the ./$ to maintain backwards consistency.
Interproscan now can use hmmer 3.3 for all member databases.
Superfamily and SSD original data files (HMM profiles) contain duplicated NAME / ACC values. This was not an issue in hmmer 3.1b2 but is in hmmer 3.3+. For that reason the 2 hmmer versions where in use by interproscan, but the problem would arise when using containers due to only a recent hmmer binary being used. The source data files where edited to in the case of Superfamily include virtual versions to the ACC (1234.5), and in the case on SFLD the NAME (name$2). Interproscan will ignore from the ./$ to maintain backwards consistency. Interproscan now can use hmmer 3.3 for all member databases.
https://www.ebi.ac.uk/panda/jira/browse/IBU-10729