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ebi-pf-team / interproscan

Genome-scale protein function classification
Apache License 2.0
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Rerunning a cancelled run #377

Closed fjell-dev closed 2 months ago

fjell-dev commented 2 months ago

Is there possible to rerun a run that was manually cancelled prior? We have a very long run (large input files) that had to be cancelled (computing resource issue) and now when the same command was started again, it seemed to start from the beginning. Would it help if we define the temp directory pointing to the one that was created before? Thank you.

matthiasblum commented 2 months ago

Hi @fjell-dev,

Unfortunately, this isn't possible. InterProScan5 doesn't have a resume function. If you have large input files, we'd recommend splitting them into smaller files (< 100k protein sequences).