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ebi-pf-team / interproscan

Genome-scale protein function classification
Apache License 2.0
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hmmpress commands to run during installation. #387

Open charles-plessy opened 3 weeks ago

charles-plessy commented 3 weeks ago

Hello,

when I installed 5.71-102.0, I had to run the following hmmpress commands before python3 setup.py interproscan.properties otherwise I would run in errors. Is that expected?

hmmpress data/antifam/7.0/AntiFam.hmm
hmmpress data/gene3d/4.3.0/gene3d_main.hmm
hmmpress data/hamap/2023_05/hamap.hmm.lib
hmmpress data/ncbifam/15.0/ncbifam.hmm
hmmpress data/panther/19.0/famhmm/binHmm
hmmpress data/pfam/37.0/pfam_a.hmm
hmmpress data/pirsf/3.10/sf_hmm_all
hmmpress data/pirsr/2023_05/sr_hmm_all
hmmpress data/sfld/4/sfld.hmm
hmmpress data/superfamily/1.75/hmmlib_1.75

Have a nice day,

Charles

tgrego commented 3 weeks ago

Hi Charles, you should not need to do any pressing, setup.py should do it for you. It may run into some trouble if there are some files leftover perhaps from a previous attempt that failed... in that case you can run python3 setup.py -f interproscan.properties and it will try to cleanup any such leftover files.