Using interproscan on a HPC Cluster

ebi-pf-team / interproscan

Genome-scale protein function classification

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Using interproscan on a HPC Cluster #4

Closed samfux84 closed 7 years ago

samfux84 commented 8 years ago

on HPC cluster, databases often have to be separated from the installation directory of a software. Is it possible to store the data directory of interproscan in a different location outside the installation directory ?

mifraser commented 8 years ago

Hi!

Yes, you can use a different data directory if you update your interproscan.properties file too. E.g. if you search the properties file for "=data/" you'll find various properties like "pfam-a.hmm.path=data/pfam/28.0/pfam_a.hmm" which would all need updating to point at the new location.

Kind regards,

Matt