implement alphamissense track and filtering out out-of-sync sequences - Githubissues

ebi-webcomponents / protvista-uniprot

The ProtVista tool for the UniProt website

MIT License

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implement alphamissense track and filtering out out-of-sync sequences #70

Closed aurel-l closed 2 months ago

aurel-l commented 3 months ago

Reference to existing issue

https://www.ebi.ac.uk/panda/jira/browse/TRM-31097 & https://www.ebi.ac.uk/panda/jira/browse/TRM-31098 Add AlphaMissense data in a coloured track & ignore AlphaFold and AlphaMissense data if sequence is out-of-sync

Description of changes

Add way to download multiple data endpoints for 1 track directly from the config
match sequence data in Proteins API and AlphaFoldDB API in order to determine if predictions are out-of-sync with the sequence
Add logic to download and parse AlphaMissense CSV data
Use the coloured track to display AlphaMissense average pathogenicity score

Testing/Styleguide

[ ] Tests pass
[ ] Linters pass