cd
git clone git@github.com:ebimodeling/biocro_regional
cd pecan
## this should work w/ git v >1.6.6 http://stackoverflow.com/a/1783426
git fetch --all
git checkout biocro-module2
update settings file
browse to <vm_ipaddress>/rstudio
open biocro_regional/vignettes/illinois_mxg_settings.xml
make sure the run/host tag uses roger (and ppn is consistent with number of cores registered in regionalbiocro.Rscript located on roger (see below) in command registerDoMC(10)
on roger, regionalbiocro.Rscript is in /home/dlebauer/dev/pecan/models/biocro/inst/regionalbiocro.Rscript
Download repositories
update settings file
<vm_ipaddress>/rstudio
biocro_regional/vignettes/illinois_mxg_settings.xml
<database>
tag toregionalbiocro.Rscript
located on roger (see below) in commandregisterDoMC(10)
Run regional workflow
<vm_ipaddress>/rstudio
, openbiocro_regional/vignettes/regional_pecan_workflow.Rmd