eblerjana / pangenie

Pangenome-based genome inference
MIT License
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Package 'jellyfish-2.0', required by 'virtual:world', not found #53

Open liukeweiaway opened 1 year ago

liukeweiaway commented 1 year ago

When i have download pangenie from github and install jellyfish-2.2.10 by conda. The error : -- The C compiler identification is GNU 8.5.0 -- The CXX compiler identification is GNU 8.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- Checking for module 'jellyfish-2.0' -- Package 'jellyfish-2.0', required by 'virtual:world', not found CMake Error at /usr/share/cmake/Modules/FindPkgConfig.cmake:556 (message): A required package was not found Call Stack (most recent call first): /usr/share/cmake/Modules/FindPkgConfig.cmake:778 (_pkg_check_modules_internal) CMakeLists.txt:11 (pkg_check_modules)

-- Configuring incomplete, errors occurred!

Wangchangsh commented 1 year ago

The same issue. Did you find a solution?

Wangchangsh commented 1 year ago

with the provided yaml file, I succeeded.

eblerjana commented 1 year ago

@liukeweiaway did you install PanGenie with the conda environment provided in the yaml file (as described in the README)?