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eblerjana / pangenie

Pangenome-based genome inference
MIT License
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what is the role of unique kmers of overhang? #71

Open Arya-bioinformatics opened 3 months ago

Arya-bioinformatics commented 3 months ago

Hi, I found the pangenie-index calculate the unique kmers in the variant flank sequences, so could you please tell me what the unique kmers are used for pangenie genotyping?

eblerjana commented 3 months ago

They are used to estimate the local average kmer coverage of variant regions.