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eblerjana / pangenie

Pangenome-based genome inference
MIT License
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variation number #81

Open zhengluo-lz opened 1 month ago

zhengluo-lz commented 1 month ago

When I use PanGenie, the actual number of output variations is much smaller than the number of input variations. Why is this?

eblerjana commented 1 month ago

Please provide more information. How did you run PanGenie (commands / parameters)? How does your input VCF look like? What does the log say?