download_zenodo is giving an error

[sruzzante]

Hi,

I'm trying to down a large number of zenodo files and this package would be super useful! Unfortunately the download_zenodo function doesn't seem to be working.

> download_zenodo("10.5281/zenodo.2547036")
Error in result$doi : $ operator is invalid for atomic vectors

The same error occurs whether I install from CRAN or github.

[eblondel]

@sruzzante can you please give your full R session info, + packages version (including zen4R - did you get the latest from github? or the one from CRAN?) I'm asking version of zen4R because i've been working on a fix for this in #98 . I'd like to make sure you use the latest version from Github.

[sruzzante]

Thanks @eblondel. My session info is here:

R version 4.2.1 (2022-06-23 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_Canada.utf8  LC_CTYPE=English_Canada.utf8    LC_MONETARY=English_Canada.utf8 LC_NUMERIC=C                   
[5] LC_TIME=English_Canada.utf8    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] zen4R_0.7.1

loaded via a namespace (and not attached):
 [1] httr_1.4.4       compiler_4.2.1   keyring_1.3.1    assertthat_0.2.1 R6_2.5.1         tools_4.2.1      curl_4.3.2       Rcpp_1.0.9      
 [9] xml2_1.3.3       codetools_0.2-18 jsonlite_1.8.4   terra_1.6-47    

I tried running this on another computer, with R4.1.2 installed, and it worked. Here's that session info:

R version 4.1.2 (2021-11-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22000)

Matrix products: default

locale:
[1] LC_COLLATE=English_Canada.1252  LC_CTYPE=English_Canada.1252    LC_MONETARY=English_Canada.1252 LC_NUMERIC=C                    LC_TIME=English_Canada.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base    

other attached packages:
[1] zen4R_0.7.1

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.9        compiler_4.1.2    later_1.3.0       urlchecker_1.0.1  prettyunits_1.1.1 profvis_0.3.7     remotes_2.4.2     tools_4.1.2      
 [9] digest_0.6.29     pkgbuild_1.3.1    pkgload_1.3.2     jsonlite_1.8.4    lattice_0.20-45   memoise_2.0.1     lifecycle_1.0.3   rlang_1.0.6      
[17] shiny_1.7.2       cli_3.4.1         rstudioapi_0.14   fastmap_1.1.0     terra_1.6-47      xml2_1.3.3        httr_1.4.4        raster_3.6-11    
[25] stringr_1.5.0     fs_1.5.2          htmlwidgets_1.5.4 devtools_2.4.4    grid_4.1.2        glue_1.6.2        R6_2.5.1          processx_3.7.0  
[33] sessioninfo_1.2.2 sp_1.5-1          callr_3.7.2       purrr_0.3.5       magrittr_2.0.3    codetools_0.2-18  ps_1.7.1          promises_1.2.0.1
[41] ellipsis_0.3.2    htmltools_0.5.3   usethis_2.1.6     assertthat_0.2.1  mime_0.12         xtable_1.8-4      httpuv_1.6.6      keyring_1.3.1    
[49] stringi_1.7.8     miniUI_0.1.1.1    cachem_1.0.6      crayon_1.5.2 

[eblondel]

Thanks @sruzzante could you reinstall zen4R from github and re-do your tests (on both machines). If you use Rstudio please always restart R session, because Rstudio keeps in cache the previous installation

[sruzzante]

Unfortunately still no luck with 4.2.1. I've tried reinstalling zen4R, restarting the R session, restarting the computer, manually removing and reinstalling curl, deleting etc... Always the same error.

It still works on my other computer, so I can't rule out that this a bug somewhere in my installation of R.

[eblondel]

I keep investigating. Other users reported the same problem at #98

[eblondel]

Should be fixed with #103

[eblondel]

Actually solved in pending github revision done with https://github.com/eblondel/zen4R/issues/106