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ebov / space-time

Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016
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TMRCA differences? #2

Open sdwfrost opened 7 years ago

sdwfrost commented 7 years ago

I'm trying to infer the TMRCA from the sample of trees in the repository. However, I get some slight differences in my estimates of TMRCA compared to the paper. My gist is here, which shows that the TMRCA I calculate is shifted back a bit, although the paper doesn't make any exact claims (just says October 2013 - February 2014). Is this just some rounding error?

rambaut commented 7 years ago

The runs on the repo were run since the BioRxiv version of the paper were posted (as a revision for the peer-reviewed manuscript). So there will be some stochastic differences.