In spatiocyte, a kinetic rate for a reaction between a 3d-diffusing molecule and 3d structure has dimensionality, 1/[time].
Although a dimension of the structure is THREE, reactions could only occur at the contact surface. Thus, the dimensionality of the rate must be [length]/[time].
Fix the corresponding dimensional factor in spatiocyte.
kaizu
commented
4 years ago
In
spatiocyte, a kinetic rate for a reaction between a 3d-diffusing molecule and 3d structure has dimensionality,1/[time].Although a dimension of the structure is THREE, reactions could only occur at the contact surface. Thus, the dimensionality of the rate must be
[length]/[time].Fix the corresponding dimensional factor in
spatiocyte.https://github.com/ecell/ecell4-base/blob/master/ecell4/spatiocyte/utils.cpp#L30-L37