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echonet / dynamic

EchoNet-Dynamic is a deep learning model for assessing cardiac function in echocardiogram videos.
https://echonet.github.io/dynamic
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Error trying to convert DICOM to AVI #36

Closed JohanWedenfelt closed 3 years ago

JohanWedenfelt commented 3 years ago

I'm trying to convert a DICOM clip to an AVI file, but it doesn't work. When debugging, line 14 in cell beginning with def makeVideo(fileToProcess, destinationFolder): I'm handed the following error messege: Exception has occurred: IndexError x index 0 is out of bounds for axis 0 with size 0 File "D:\pythonprojects\echonet\dynamic\scripts\convertDICOM.py" yCrop = np.where(mean<1[0][0]

testarray value begins with [ 0, 127, 127], and mean is array([84.908.......

Are there special requirements on the input DICOM clips? This is a clip of 1024 columns and 768 rows and about 130 frames.

douyang commented 3 years ago

Dicoms can be stored in three channel or black and white single channel, which will require modifications to the code.