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eclarke / sarcoid-microbiome-paper

Code to generate figures, etc for the Clarke et al sarcoid microbiome paper
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Reproducible example #1

Open akastrin opened 6 years ago

akastrin commented 6 years ago

Very interesting and useful package. I wonder if you could provide some instructions how to use your package? I loaded data with LoadData() function but then I did not find how to proceed with the analysis.

eclarke commented 6 years ago

Thanks for your interest. The package structure is a bit unusual, I admit. The main script is in inst/generate_figures.Rmd (https://raw.githubusercontent.com/eclarke/sarcoid-microbiome-paper/master/inst/generate_figures.Rmd). That script will go through the process of making all the figures for the paper.

Many of the functions in the package are not really general-purpose, but I'd be happy to explain how any of them work if you have specific questions.