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ecmwf-projects / c3s2-eqc-quality-assessment

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insitu-observations-gruan-reference-network use case: A STUDY ON THE TROPOPAUSE AS CLIMATE INDICATOR #19

Open virginiaciardini opened 8 months ago

virginiaciardini commented 8 months ago

Data Type

In Situ

Assessment Category

Variability

Dataset Name

insitu-observations-gruan-reference-network

Question Number

1

Workflow ID

eqctier3-9cf3bf5d-61a7-4717-8f19-9f6aa0f5da26

Zipped Notebook

C3S_520_Quality_assessment_Template_gruan_uq1_v4.zip

Environment

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xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - xerces-c=3.2.5=hac6953d_0 - xesmf=0.8.2=pyhd8ed1ab_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.41=hd590300_0 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.7=h8ee46fc_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xskillscore=0.0.24=pyhd8ed1ab_0 - xyzservices=2023.10.1=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.4=py311h459d7ec_0 - zarr=2.16.1=pyhd8ed1ab_0 - zeromq=4.3.5=h59595ed_0 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstd=1.5.5=hfc55251_0 - pip: - c3s-eqc-automatic-quality-control==0.1.2.dev103+gaf19fc1 - cacholote==0.7.2 - cads-toolbox==0.0.2b0 - cgul==0.0.4 - coucal==0.0.1b3 - emohawk==0.0.4b0 - kaleido==0.2.1 - pymannkendall==1.4.3 prefix: /data/common/miniforge3/envs/wp5

Anything else we need to know?

No response

malmans2 commented 8 months ago

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/b16535afd1ccec57b061da486feb63212d6de6c7/In_Situ/insitu_insitu-observations-gruan-reference-network_variability_q01.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications, please share here the new version of the notebook and I will provide a new permalink. Let me know when the notebook is accepted, I will merge the PR into main.

malmans2 commented 8 months ago

Hi @virginiaciardini,

I got the email for an update but I guess you deleted the message? No worries if that's the case, I just wanted to make sure that you did it on purpose.

virginiaciardini commented 7 months ago

Hi @malmans2, I revised the JN and made some changes. Please find attached the new version. Could you provide me with a new permanent link? As you can see in the JN, a warning appears. How can I solve it? Thank you. C3S_520_Quality_assessment_Template_gruan_uq1_v4_rev_1.zip

Virginia

malmans2 commented 7 months ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/840a5f7f10db1a1e381dccb8c63e2b4bea99b627/In_Situ/insitu_insitu-observations-gruan-reference-network_variability_q01.ipynb

As you can see in the JN, a warning appears. How can I solve it?

I think it's OK as it's clear why the warning is issued (there's missing values in the timeseries). If you or the reviewer want to silence that warning, please open an issue here and I'll show you how to do that.

virginiaciardini commented 7 months ago

Hi @malmans2 I will let you know whether or not it is necessary to silence the warning. Thanks, Virginia

malmans2 commented 6 months ago

Hi @virginiaciardini,

I noticed that in your notebooks there's a new deprecation warning. Basically, xarray is deprecating the method drop in favour of drop_vars. Next time you request a permalink, please remember to substitute drop with drop_vars. I already did it in the template you've been using. See https://github.com/bopen/c3s-eqc-toolbox-template/commit/9bd6f664e5c489bcb5a48bb1fc5dde9c0afca825

virginiaciardini commented 6 months ago

Hi @malmans,

ok. thanks, Virginia

virginiaciardini commented 1 month ago

Hi @malmans2, I revised again the JN and made some changes, using the new template. Please find attached the new version. Could you provide me with a new permanent link? Thank you. Virginia

insitu-observations-gruan-reference-network_variability_q01_rev.zip

malmans2 commented 1 month ago

Hi @virginiaciardini,

This notebook was submitted a long time ago, before the workflow ID was clearly shown in the CIM. Could you please send me the workflow ID? It looks like this: eqctier3-1123e4567-e89b-12d3-a456-42665544000

virginiaciardini commented 1 month ago

Hi @malmans2, here the workflow ID

eqctier3-9cf3bf5d-61a7-4717-8f19-9f6aa0f5da26

thank you

malmans2 commented 1 month ago

Thanks! I only hade to make a minor change. The GCOS Reference Upper Air Network (GRUAN) can not be a level 4 header as you can't jump from H2 to H4. I.e., it is this now: ### The GCOS Reference Upper Air Network (GRUAN)

I'll send you permalink and preview in a minute.

virginiaciardini commented 1 month ago

Perfect! thanks

malmans2 commented 1 month ago

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/80682a47ecf0dfc8be158d17039ee23ebb5e6b70/In_Situ/insitu_insitu-observations-gruan-reference-network_variability_q01.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

virginiaciardini commented 1 month ago

Hi @malmans2, May I ask you for a new link? minor changes are required

Thanks, Virginia

insitu-observations-gruan-reference-network_variability_q01_rev.zip

malmans2 commented 1 month ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/79b663024c94dcec8cfd472b37ce56e16133e2c8/In_Situ/insitu_insitu-observations-gruan-reference-network_variability_q01.ipynb

PREVIEW

virginiaciardini commented 1 month ago

Hi @malmans2, I'm sorry but again minor changes are required. Can I ask you for a new link?

Thanks, Virginia

insitu-observations-gruan-reference-network_variability_q01_rev.zip

malmans2 commented 1 month ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/c4c255a0ed2e053a5fa6c798a828dc406a2cb75c/In_Situ/insitu_insitu-observations-gruan-reference-network_variability_q01.ipynb

PREVIEW