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ecmwf-projects / c3s2-eqc-quality-assessment

https://ecmwf-projects.github.io/c3s2-eqc-quality-assessment/
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Trends and Variability: Fire burned area trends (Use Case 2) #49

Open ritavcunha opened 4 months ago

ritavcunha commented 4 months ago

Data Type

Satellite ECVs - Land Biosphere

Assessment Category

Trend Assessment

Dataset Name

satellite-fire-burned-area

Question Number

2

Workflow ID

b8eb3ef2-00b5-11ef-b710-2e9677d436a1

Zipped Notebook

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_FIRE_UQ2_v1.11.zip

Environment

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stack_data=0.6.2=pyhd8ed1ab_0 - statsmodels=0.14.0=py310h1f7b6fc_2 - structlog=23.2.0=pyhd8ed1ab_0 - tblib=2.0.0=pyhd8ed1ab_0 - tenacity=8.2.3=pyhd8ed1ab_0 - terminado=0.17.1=pyh41d4057_0 - textwrap3=0.9.2=py_0 - threadpoolctl=3.2.0=pyha21a80b_0 - tiledb=2.13.2=hd532e3d_0 - tinycss2=1.2.1=pyhd8ed1ab_0 - tk=8.6.13=noxft_h4845f30_101 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.0=pyhd8ed1ab_0 - tornado=6.3.3=py310h2372a71_1 - tqdm=4.66.1=pyhd8ed1ab_0 - traitlets=5.13.0=pyhd8ed1ab_0 - truststore=0.8.0=pyhd8ed1ab_0 - typer=0.9.0=pyhd8ed1ab_0 - types-python-dateutil=2.8.19.14=pyhd8ed1ab_0 - typing-extensions=4.8.0=hd8ed1ab_0 - typing_extensions=4.8.0=pyha770c72_0 - typing_utils=0.1.0=pyhd8ed1ab_0 - tzcode=2023c=h0b41bf4_0 - tzdata=2023c=h71feb2d_0 - ucx=1.14.1=h64cca9d_5 - udunits2=2.2.28=h40f5838_3 - ukkonen=1.0.1=py310hd41b1e2_4 - unicodedata2=15.1.0=py310h2372a71_0 - uri-template=1.3.0=pyhd8ed1ab_0 - uriparser=0.9.7=hcb278e6_1 - urllib3=2.0.7=pyhd8ed1ab_0 - virtualenv=20.24.6=pyhd8ed1ab_0 - wcwidth=0.2.9=pyhd8ed1ab_0 - webcolors=1.13=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.6.4=pyhd8ed1ab_0 - wheel=0.41.3=pyhd8ed1ab_0 - xarray=2023.10.1=pyhd8ed1ab_0 - xarraymannkendall=1.4.5=pyhd8ed1ab_0 - xcb-util=0.4.0=hd590300_1 - xcb-util-image=0.4.0=h8ee46fc_1 - xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - xerces-c=3.2.4=h8d71039_2 - xesmf=0.8.2=pyhd8ed1ab_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.40=hd590300_0 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.7=h8ee46fc_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xskillscore=0.0.24=pyhd8ed1ab_0 - xxhash=0.8.2=hd590300_0 - xyzservices=2023.10.1=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.2=py310h2372a71_1 - zarr=2.16.1=pyhd8ed1ab_0 - zeromq=4.3.5=h59595ed_0 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstandard=0.22.0=py310h1275a96_0 - zstd=1.5.5=hfc55251_0 - pip: - anywidget==0.7.1 - c3s-eqc-automatic-quality-control==0.1.2.dev90+ge09b531 - cacholote==0.5.0 - cads-toolbox==0.0.2b0 - cdo==1.6.0 - cdstoolbox-remote==0.0.1 - cgul==0.0.4 - coucal==0.0.1b3 - descartes==1.1.0 - emohawk==0.0.4b0 - ipywidgets==8.1.1 - jupyterlab-widgets==3.0.9 - kaleido==0.2.1 - lonboard==0.5.0 - matplotlib==3.8.0 - palettable==3.3.3 - psygnal==0.9.5 - pyarrow==14.0.1 - widgetsnbextension==4.0.9 ```

Anything else we need to know?

No response

malmans2 commented 4 months ago

Hi @ritavcunha,

Are you sure that satellite-fire-burn is correct? It looks like it does not exist. Please edit your original comment with the exact name of the dataset.

Also, please make sure that you are sharing the workflow ID (note that workflow ID is different than task ID). I think that your q1 and q2 notebooks should share the same workflow ID. (It's OK if you used the wrong one for the first notebook, but let's make sure that we are using the right one for this one)

ritavcunha commented 4 months ago

Hi @malmans2,

Sorry for the mistake regarding the dataset name. I already corrected the name editing my first comment.

The updated ID for all of the UQs is this: b8eb3ef2-00b5-11ef-b710-2e9677d436a1 I had some problems regarding the submission of the Tier3.

Best, Rita

malmans2 commented 4 months ago

OK, understood.

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/87675274da71ff003f6bf7f8a5b827dad8722077/Satellite_ECVs/Land_Biosphere_ECVs/satellite_satellite-fire-burned-area_trend-assessment_q02.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

ritavcunha commented 4 months ago

Hi @malmans2 ,

After the revisions on CIM, I needed to change some minor aspects of the notebook, so I need a new permalink. There it is the more update notebook:

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_FIRE_UQ2_v1.21.zip

malmans2 commented 4 months ago

Here it is: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/04a0159a949f1605849bb19dd854fb2c291846ea/Satellite_ECVs/Land_Biosphere_ECVs/satellite_satellite-fire-burned-area_trend-assessment_q02.ipynb

ritavcunha commented 3 months ago

Hi @malmans2 ,

I had also to change some minor details on jupyter notebook of this Use Case, can you update the permalink? The new zip is this: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_FIRE_UQ2_v1.22.zip

Thank you in advance. Best, Rita

malmans2 commented 3 months ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/791e8ee1e7032aa748d968b422e29795ef86728e/Satellite_ECVs/Land_Biosphere_ECVs/satellite_satellite-fire-burned-area_trend-assessment_q02.ipynb

malmans2 commented 3 months ago

Hi @ritavcunha,

I tested this notebook on a brand new environment. Unfortunately, it looks like some of the libraries that we are using introduced a breaking change. No big deal as it's very easy to fix and it does not affect the cached data.

I've fixed the template. As you can see, I've only changed a couple of lines: https://github.com/bopen/c3s-eqc-toolbox-template/commit/c32da2f2fcac3d12aa4ce5328ebc8e2d29772026 I suggest to implement these changes in your notebook next time you'll request a permalink. Here is the last notebook you submitted in this repo with the changes implemented: satellite_satellite-fire-burned-area_trend-assessment_q02.zip

ritavcunha commented 3 months ago

Hi @malmans2,

Thank you for your heads-up. I will certainly implement the changes you suggest. Thank you, one more time.

Best, Rita

ritavcunha commented 2 months ago

Hi there @malmans2,

We needed to change the jupyter notebook, after the released template. Here is the new zip file: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_FIRE_UQ2_v1.27.zip

malmans2 commented 2 months ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/8dcc13dbf2a3c19d355a7f59f2a5df17165cbe0f/Satellite_ECVs/Land_Biosphere_ECVs/satellite_satellite-fire-burned-area_trend-assessment_q02.ipynb

ritavcunha commented 2 weeks ago

Hi @malmans2, Here is the new jupyter notebook regarding User Case 2 of the Fire Burn Area dataset. I needed to make some minor changes, therefore I need a new permalink. One of the things that the reviewer mentioned was that the links in "Methodology" didn't work. Could you please check if it's ok?

Thank you.

Best Regards, Rita

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_FIRE_UQ2_v1.28.zip

malmans2 commented 1 week ago

Hi @ritavcunha,

Sorry about the delay, I just got back from holidays. It looks like you are not following the instructions in the latest template (you are using the wrong syntax).

Please have a look at the template instruction and example here: https://ecmwf-projects.github.io/c3s2-eqc-quality-assessment/intro.html If you look at the methodology section, you'll see how to make references.

I fixed your notebook already, so if you look at my version (i.e., the permalink), you should be able to understand how to properly format references next time.

malmans2 commented 1 week ago

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/969ce28f8409f92f4990bc501316fc650eb823df/Satellite_ECVs/Land_Biosphere_ECVs/satellite_satellite-fire-burned-area_trend-assessment_q02.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

ritavcunha commented 1 week ago

Hi @malmans2 , thank you for your help! I will apply what you did on the next Use Cases. Thank you, again.

Best regards, Rita