ecmwf-projects / c3s2-eqc-quality-assessment

https://ecmwf-projects.github.io/c3s2-eqc-quality-assessment/
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Studying the Greenhouse Effect produced by the water vapour #64

Open gmandorl opened 5 months ago

gmandorl commented 5 months ago

Data Type

Satellite ECVs - Atmosphere Physics

Assessment Category

Consistency Assessment

Dataset Name

satellite-total-column-water-vapour-land-ocean

Question Number

1

Workflow ID

748d757e-0d10-11ef-a43b-fa90f00e9db9

Zipped Notebook

Hi,

I am not sure of where to find the Workflow ID and I am also unclear on the Assessment Category for this particular use case.

satellite_satellite-total-column-water-vapour-land-ocean_validation_q1.zip

Environment

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udunits2=2.2.28=h40f5838_3 - uri-template=1.3.0=pyhd8ed1ab_0 - uriparser=0.9.7=h59595ed_1 - urllib3=2.2.1=pyhd8ed1ab_0 - wcwidth=0.2.13=pyhd8ed1ab_0 - webcolors=1.13=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.8.0=pyhd8ed1ab_0 - wheel=0.43.0=pyhd8ed1ab_1 - xarray=2024.3.0=pyhd8ed1ab_0 - xarraymannkendall=1.4.5=pyhd8ed1ab_0 - xcb-util=0.4.0=hd590300_1 - xcb-util-image=0.4.0=h8ee46fc_1 - xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - xerces-c=3.2.5=hac6953d_0 - xesmf=0.8.5=pyhd8ed1ab_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.41=hd590300_0 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.9=h8ee46fc_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xskillscore=0.0.26=pyhd8ed1ab_0 - xyzservices=2024.4.0=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.4=py311h459d7ec_0 - zarr=2.17.2=pyhd8ed1ab_0 - zeromq=4.3.5=h59595ed_1 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstd=1.5.5=hfc55251_0 - pip: - c3s-eqc-automatic-quality-control==0.1.2.dev109+gacaba21 - cacholote==0.10.0 - cads-toolbox==0.0.2b0 - cgul==0.0.4 - coucal==0.0.1b3 - emohawk==0.0.4b0 - kaleido==0.2.1 - pymannkendall==1.4.3 prefix: /data/common/miniforge3/envs/wp5 ```

Anything else we need to know?

No response

malmans2 commented 5 months ago

Hi @gmandorl ,

Please add the missing information in your comment above and let me know when you've done it.

vincenzodetoma commented 5 months ago

Hi @gmandorl, from a quick look at the notebook you attached I see you're assessing if the satellite data you are analyzing is able to reproduce a well known relation from literature. Then I would say your use case falls into 'consistency assessment' assessment category. If you think it's not, would you like to suggest a different category for your use case? I'm not sure but I think we can manage to create a general enough new category (they are conceived to be widely applicable for different use cases / user questions)

gmandorl commented 5 months ago

@malmans2 Thank you for the instructions. I updated Assesment Category and Environment. However, I just realized that I don't have that entry in CIM anymore. I will try to get it back and I will update this request. In addition, where is the issue template?

@vincenzodetoma thank you very much. Isn't it the most frequent category?

malmans2 commented 5 months ago

The issue template is what you see when you open an issue (i.e., the form with instructions)

gmandorl commented 5 months ago

I see the instruction for the Environment now. I am very sorry I did not see it before

malmans2 commented 5 months ago

No worries. I edited your env info so they are collapsable. Let me know when you have the Workflow ID so I can issue the permalink.

vincenzodetoma commented 5 months ago

@malmans2 Thank you for the instructions. I updated Assesment Category and Environment. However, I just realized that I don't have that entry in CIM anymore. I will try to get it back and I will update this request. In addition, where is the issue template?

@vincenzodetoma thank you very much. Isn't it the most frequent category?

@gmandorl, depends. For now the most visited are the ones like trend assessment, consistency assessment, climate and weather extremes, climate monitoring.

gmandorl commented 5 months ago

@malmans2 I updated Assesment Category, Environment, and Workflow ID now. Can you generate the permanent link?

malmans2 commented 5 months ago

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/756500918e5a54ef71b661a4ab436eba21f9304b/Satellite_ECVs/Atmosphere_Physics_ECVs/satellite_satellite-total-column-water-vapour-land-ocean_consistency-assessment_q01.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

malmans2 commented 4 months ago

Hi @gmandorl,

I'm running this notebook on a new VM as I'm pre-populating the cache to get ready for the migration. I found a small issue. Most of CDS datasets that accept the area parameter use this convention for coordinates: [N, W, S, E]. However, you are using [S, W, N, E].

It looks like the CDS recently changed the form of the dataset you are using, and only [N, W, S, E] is now allowed. You are not going to see this breaking change on the old VM because the data is already cached, but you'll experience it in the future.

I changed this line in your code, and I'm getting the same results:

datasets = {}

for collection_id in requests :
    request = requests[collection_id]
    datasets[collection_id] =  download.download_and_transform(
                                    collection_id,
-                                     download.update_request_date(request | {'area': [lat_min, lon_min, lat_max, lon_max]}, 
+                                     download.update_request_date(request | {'area': [lat_max, lon_min, lat_min, lon_max]}, 
                                                                 start, 
                                                                 stop, 
                                                                 stringify_dates=True),
                                        chunks=chunks,
                                    )

Could you please re-run your NB with this change and make sure that it works as expected? If everything looks OK, please implement the change in you NB next time you'll request a permalink. Also, did I make a template for this notebooks? If yes, I can't find it: Could you please send me the URL?

gmandorl commented 4 months ago

Hi @malmans2,

I just run the notebook and it works as expected: the configurations [S, W, N, E] and [N, W, S, E] produce the same results. Should I do something when moving to the new VM?

There is a template for this notebook on: https://github.com/bopen/c3s-eqc-toolbox-template/issues/150 but I modified the notebook after your corrections.

malmans2 commented 4 months ago

OK, I'll make sure the template uses the latest CDS form. No need to do anything when we'll migrate. Just make sure you implement the change above when you'll request a new permalink.

malmans2 commented 4 months ago

You can also send me the NB with the fix now, it's up to you. I'll store it on GitHub and will provide the latest permalink.

gmandorl commented 4 months ago

I will send you the new fixed NB when I receive the comments from the data providers.