Climatology: Precipitation and wind over Europe

ritavcunha commented 6 months ago

Data Type

In Situ

Assessment Category

Climate Monitoring

Dataset Name

insitu-gridded-observations-europe

Question Number

3

Workflow ID

eqctier3-74179ca0-6a1b-4e5d-a3c4-0f113978a2b3

Zipped Notebook

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.3.zip

Environment

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stack_data=0.6.2=pyhd8ed1ab_0 - statsmodels=0.14.0=py310h1f7b6fc_2 - structlog=23.2.0=pyhd8ed1ab_0 - tblib=2.0.0=pyhd8ed1ab_0 - tenacity=8.2.3=pyhd8ed1ab_0 - terminado=0.17.1=pyh41d4057_0 - textwrap3=0.9.2=py_0 - threadpoolctl=3.2.0=pyha21a80b_0 - tiledb=2.13.2=hd532e3d_0 - tinycss2=1.2.1=pyhd8ed1ab_0 - tk=8.6.13=noxft_h4845f30_101 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.0=pyhd8ed1ab_0 - tornado=6.3.3=py310h2372a71_1 - tqdm=4.66.1=pyhd8ed1ab_0 - traitlets=5.13.0=pyhd8ed1ab_0 - truststore=0.8.0=pyhd8ed1ab_0 - typer=0.9.0=pyhd8ed1ab_0 - types-python-dateutil=2.8.19.14=pyhd8ed1ab_0 - typing-extensions=4.8.0=hd8ed1ab_0 - typing_extensions=4.8.0=pyha770c72_0 - typing_utils=0.1.0=pyhd8ed1ab_0 - tzcode=2023c=h0b41bf4_0 - tzdata=2023c=h71feb2d_0 - ucx=1.14.1=h64cca9d_5 - udunits2=2.2.28=h40f5838_3 - ukkonen=1.0.1=py310hd41b1e2_4 - unicodedata2=15.1.0=py310h2372a71_0 - uri-template=1.3.0=pyhd8ed1ab_0 - uriparser=0.9.7=hcb278e6_1 - urllib3=2.0.7=pyhd8ed1ab_0 - virtualenv=20.24.6=pyhd8ed1ab_0 - wcwidth=0.2.9=pyhd8ed1ab_0 - webcolors=1.13=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.6.4=pyhd8ed1ab_0 - wheel=0.41.3=pyhd8ed1ab_0 - xarray=2023.10.1=pyhd8ed1ab_0 - xarraymannkendall=1.4.5=pyhd8ed1ab_0 - xcb-util=0.4.0=hd590300_1 - xcb-util-image=0.4.0=h8ee46fc_1 - xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - xerces-c=3.2.4=h8d71039_2 - xesmf=0.8.2=pyhd8ed1ab_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.40=hd590300_0 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.7=h8ee46fc_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xskillscore=0.0.24=pyhd8ed1ab_0 - xxhash=0.8.2=hd590300_0 - xyzservices=2023.10.1=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.2=py310h2372a71_1 - zarr=2.16.1=pyhd8ed1ab_0 - zeromq=4.3.5=h59595ed_0 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstandard=0.22.0=py310h1275a96_0 - zstd=1.5.5=hfc55251_0 - pip: - anywidget==0.7.1 - c3s-eqc-automatic-quality-control==0.1.2.dev90+ge09b531 - cacholote==0.5.0 - cads-toolbox==0.0.2b0 - cdo==1.6.0 - cdstoolbox-remote==0.0.1 - cgul==0.0.4 - coucal==0.0.1b3 - descartes==1.1.0 - emohawk==0.0.4b0 - ipywidgets==8.1.1 - jupyterlab-widgets==3.0.9 - kaleido==0.2.1 - lonboard==0.5.0 - matplotlib==3.8.0 - palettable==3.3.3 - psygnal==0.9.5 - pyarrow==14.0.1 - widgetsnbextension==4.0.9

Anything else we need to know?

No response

ritavcunha commented 6 months ago

Hi @malmans2 ,

It seems that I put the Workflow ID wrong. This is the correct one: eqctier3-12f4a033-8bc6-4209-a4db-a68d73f13b61

malmans2 commented 6 months ago

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/9603d2abb15a2849d744ea052b160bf8963e6c96/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q03.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

malmans2 commented 5 months ago

Hi @ritavcunha,

I was caching this notebook on the new VM and I noticed that you submitted a notebook with no output. Was that intended?

ritavcunha commented 5 months ago

Hi @malmans2 ,

Yes, the notebook is without outputs, just because the download of ERA5 is very slow, and we had to advance with the notebook code itself.

Thank you for the remark.

Best regards, Rita

ritavcunha commented 2 months ago

Hi @malmans2,

We had to make some minor changes.

Here is the new zip file: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.4.zip

Best regards, Rita Cunha

malmans2 commented 2 months ago

See: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/issues/100#issuecomment-2332239072

ritavcunha commented 2 months ago

Hi @malmans2 ,

So the new workflow ID, for Use Case 3 is: Task: 1c557858-5fd9-11ef-8af3-c24173f93b26 Workflow: eqctier3-74179ca0-6a1b-4e5d-a3c4-0f113978a2b3

Regarding the figure, I didn't attach any.

The new zip file is this one (without the logo and the warning): C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.5.zip

I'm sorry for any inconvenience.

Best regards, Rita Cunha

malmans2 commented 2 months ago

Hi there,

A few issues in this notebook as well:

The ref to 4. Calculate the Probability density function (PDF) was wrong (you had a typo, you had section-1 in the tag)
You can not jump from H3 to H6. I.e., Work in progress must be one level down the header above (i.e., #### Work in progress)

I fixed the issues myself, I'll share the links in a minute.

malmans2 commented 2 months ago

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/326b63490ab002450ede41240a3ffcd365f24aeb/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q03.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

ritavcunha commented 1 month ago

Hi @malmans2 ,

We needed to make minor changes regarding the layout of the notebook.

Here is the new zip file:

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.6.zip

Best, Rita

malmans2 commented 1 month ago

Hi @ritavcunha,

It looks like this notebook is not aligned with the latest template. For example, the Analysis and results section is missing. Also, you should not include the note on top, that's an internal note for evaluators only.

ritavcunha commented 1 month ago

Hi @malmans2 ,

Sorry for the mistake here is the new zip file: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.8.zip

Best, Rita

malmans2 commented 1 month ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/2af9c8c0c038da8ac498acf5506ee0958a2b9c84/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q03.ipynb

PREVIEW

ritavcunha commented 3 weeks ago

Hi @malmans2,

In order to implement all the requested changes, here is the new updated zip file of this Use Case: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.12.zip

Best, Rita

malmans2 commented 3 weeks ago

@ritavcunha there's a couple of problems:

Section 2 uses the wrong heading levels, you should use ### 2. bla bla bla and #### 2.1. bla bla bla
You have broken references in the notebook, pointing to an old version which is v1.9. We went through this already, which is why I suggested to remove any reference to the notebook itself. It's not needed. You can just use this: (code-section-2)=

malmans2 commented 3 weeks ago

Also, you don't need to hardcode the title in the Methodology section. This is done automatically. You can use the syntax shown in the template:

**[](section-1)**
 * Sub-steps or key points listed in bullet below. No strict requirement to match and link to sub-headings.

**[](section-2)**
 * Sub-steps or key points listed in bullet below. No strict requirement to match and link to sub-headings.

**[](section-3)**
 * Sub-steps or key points listed in bullet below. No strict requirement to match and link to sub-headings.

**[](section-4)**
 * Sub-steps or key points listed in bullet below. No strict requirement to match and link to sub-headings.

**[](section-5)** 
 * Sub-steps or key points listed in bullet below. No strict requirement to match and link to sub-headings.

As you can see brackets are empty, so if you change the title of a section in the future, the reference is also consistent with the new title.

ritavcunha commented 3 weeks ago

Hi @malmans2 , you're right! I will revise and then forward to you again. Sorry for any inconveniente.

Best, Rita

ritavcunha commented 3 weeks ago

Hi @malmans2,

Here is the new version. Please let me know if something else is needed. C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ3_v1.13.zip

malmans2 commented 3 weeks ago

A few more issues, but I’ve addressed them:

The note at the top is for internal use only. It’s for you (the evaluator) in case anything is unclear, so you don't need to include it in the notebook.
In the Quality assessment statement section, you need to wrap the bullet points in the admonition syntax as shown in the template.

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/5ed47390d27cf315d3c7698a0a2dc999c2783255/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q03.ipynb

PREVIEW

ecmwf-projects / c3s2-eqc-quality-assessment