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ecmwf-projects / c3s2-eqc-quality-assessment

https://ecmwf-projects.github.io/c3s2-eqc-quality-assessment/
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Monitoring droughts over the Iberian Peninsula. #98

Open ritavcunha opened 6 months ago

ritavcunha commented 6 months ago

Data Type

In Situ

Assessment Category

Climate Monitoring

Dataset Name

insitu-gridded-observations-europe

Question Number

4

Workflow ID

eqctier3-f5222810-e831-4064-8e2b-52a59811c0c6

Zipped Notebook

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ4_v1.0.zip

Environment

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stack_data=0.6.2=pyhd8ed1ab_0 - statsmodels=0.14.0=py310h1f7b6fc_2 - structlog=23.2.0=pyhd8ed1ab_0 - tblib=2.0.0=pyhd8ed1ab_0 - tenacity=8.2.3=pyhd8ed1ab_0 - terminado=0.17.1=pyh41d4057_0 - textwrap3=0.9.2=py_0 - threadpoolctl=3.2.0=pyha21a80b_0 - tiledb=2.13.2=hd532e3d_0 - tinycss2=1.2.1=pyhd8ed1ab_0 - tk=8.6.13=noxft_h4845f30_101 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.0=pyhd8ed1ab_0 - tornado=6.3.3=py310h2372a71_1 - tqdm=4.66.1=pyhd8ed1ab_0 - traitlets=5.13.0=pyhd8ed1ab_0 - truststore=0.8.0=pyhd8ed1ab_0 - typer=0.9.0=pyhd8ed1ab_0 - types-python-dateutil=2.8.19.14=pyhd8ed1ab_0 - typing-extensions=4.8.0=hd8ed1ab_0 - typing_extensions=4.8.0=pyha770c72_0 - typing_utils=0.1.0=pyhd8ed1ab_0 - tzcode=2023c=h0b41bf4_0 - tzdata=2023c=h71feb2d_0 - ucx=1.14.1=h64cca9d_5 - udunits2=2.2.28=h40f5838_3 - ukkonen=1.0.1=py310hd41b1e2_4 - unicodedata2=15.1.0=py310h2372a71_0 - uri-template=1.3.0=pyhd8ed1ab_0 - uriparser=0.9.7=hcb278e6_1 - urllib3=2.0.7=pyhd8ed1ab_0 - virtualenv=20.24.6=pyhd8ed1ab_0 - wcwidth=0.2.9=pyhd8ed1ab_0 - webcolors=1.13=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.6.4=pyhd8ed1ab_0 - wheel=0.41.3=pyhd8ed1ab_0 - xarray=2023.10.1=pyhd8ed1ab_0 - xarraymannkendall=1.4.5=pyhd8ed1ab_0 - xcb-util=0.4.0=hd590300_1 - xcb-util-image=0.4.0=h8ee46fc_1 - xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - xerces-c=3.2.4=h8d71039_2 - xesmf=0.8.2=pyhd8ed1ab_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.40=hd590300_0 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.7=h8ee46fc_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xskillscore=0.0.24=pyhd8ed1ab_0 - xxhash=0.8.2=hd590300_0 - xyzservices=2023.10.1=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.2=py310h2372a71_1 - zarr=2.16.1=pyhd8ed1ab_0 - zeromq=4.3.5=h59595ed_0 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstandard=0.22.0=py310h1275a96_0 - zstd=1.5.5=hfc55251_0 - pip: - anywidget==0.7.1 - c3s-eqc-automatic-quality-control==0.1.2.dev90+ge09b531 - cacholote==0.5.0 - cads-toolbox==0.0.2b0 - cdo==1.6.0 - cdstoolbox-remote==0.0.1 - cgul==0.0.4 - coucal==0.0.1b3 - descartes==1.1.0 - emohawk==0.0.4b0 - ipywidgets==8.1.1 - jupyterlab-widgets==3.0.9 - kaleido==0.2.1 - lonboard==0.5.0 - matplotlib==3.8.0 - palettable==3.3.3 - psygnal==0.9.5 - pyarrow==14.0.1 - widgetsnbextension==4.0.9

Anything else we need to know?

No response

malmans2 commented 6 months ago

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/865a5553112a98eb0856e038e324bdf1b1b2e2e7/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q04.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

malmans2 commented 5 months ago

Hi @ritavcunha,

I'm caching this notebook in the new VM and I found a small issue. I'm getting this error:

ValueError: dimension time on 0th function argument to apply_ufunc with dask='parallelized' consists of multiple chunks, but is also a core dimension. To fix, either rechunk into a single array chunk along this dimension, i.e., .chunk(dict(time=-1)), or pass allow_rechunk=True in dask_gufunc_kwargs but beware that this may significantly increase memory usage.

The error message is very helpful, so it should be easy to fix if you get that. Basically, you need to rechunk the object passed to apply_ufunc. E.g., obj.chunk(time=-1)

ritavcunha commented 2 months ago

Hi @malmans2,

We had to make some changes. Here is the new zip file: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ4_v1.1.zip

Best regards, Rita Cunha

malmans2 commented 2 months ago

See: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/issues/100#issuecomment-2332239072

ritavcunha commented 2 months ago

Hi @malmans2 ,

So the new workflow ID, for Use Case 4 is: Task: 1e915f0e-5fd9-11ef-8af3-c24173f93b26 Workflow: eqctier3-f5222810-e831-4064-8e2b-52a59811c0c6

Regarding the figure, I didn't attach any.

The new zip file is this one (without the logo and the warning): C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ4_v1.1.zip

I'm sorry for any inconvenience.

Best regards, Rita Cunha

malmans2 commented 2 months ago

Hi there, similar problem to #97. You can not jump from H2 to H4 (i.e., Import all the libraries/packages and Data Overview must be H3). I fixes this one as well, I'll share the links in a minute.

malmans2 commented 2 months ago

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/3917f76d5924b8e9edc650bf97752a298384b0e3/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q04.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

ritavcunha commented 1 month ago

Hi @malmans2 ,

We needed to make minor changes regarding the layout of the notebook.

Here is the new zip file:

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ4_v1.2.zip

Best, Rita

ritavcunha commented 1 month ago

Hi @malmans2 ,

It seems that I have in fault the title of Analysis and Results, please disregard the previous zip file, and considere only this new one: C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ4_v1.3.zip

Best, Rita

malmans2 commented 1 month ago

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/2ad35e413c655cf9c451756165374cb784602915/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q04.ipynb

PREVIEW

ritavcunha commented 4 days ago

Hi @malmans2,

In order to implement all the requested changes, here is the new updated zip file of this Use Case 4:

C3S2_D520.5.3.14b_Quality_Assessment_User_Questions_EOBS_UQ4_v2.2.zip

Please, let me know if there is any problem.

Best, Rita

malmans2 commented 4 days ago

Hi @ritavcunha,

The quality assessment bullet points must be wrapped in the admonition syntax as shown in the template. I fixed it, please include this change if you'll need to revise the notebook.

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/ef6340e81d0ec26bf9de0133c967bb698003b625/In_Situ/insitu_insitu-gridded-observations-europe_climate-monitoring_q04.ipynb

PREVIEW