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eco-stats / mvabund

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parallelize anova.manyglm ? #3

Open jorondo1 opened 4 months ago

jorondo1 commented 4 months ago

Hi, I'm applying this function to high-dimensional microbiome data, the bootstrap can take a very long time. Having 10 cores on my laptop I'm wondering if there's a way to parallelize the process or if you plan on implementing one ? I see that the anova.manyany function has nCores, but anova.manyglm doesn't seem to.

cheers

bensutherland commented 4 months ago

I also have this question. It seems like anova.manyglm uses all available cores when I launch on an ubuntu 22.04 in RStudio. It would be great to be able to specify the requested number of cores if possible. Thank you!