Review Bioinformatics Trainings

[collinschwantes]

• [ ] Check accessibility
• [ ] Check pedagogy
• [ ] Check grammar

[collinschwantes]

• We may want to add a metagenomics/bioinformatics prefix to chapter titles or place all items into their own metagenomics and bioinformatics chapters

[collinschwantes]

• Define all acronyms once before using
  • NSG
  • PHRED

[collinschwantes]

Really like the structure of the walk through section of the Quality control chapter. It might be helpful to include the visualization that is the final output.

[collinschwantes]

In the Assembly of high-throughput data chapter you leave us dangling a little bit with this final sentence in the formal discussion of de Bruijn graphs

"But first, we will discuss a bit about the importance of the size of the k-mer."

Did you decide to drop the discussion?

[collinschwantes]

Text is from this section I the following sentence is missing some words: "These limitations are particularly evident when are used NCBI databases"

maybe - These limitations are particularly evident when they are used with NCBI databases

[collinschwantes]

@alexarmerov I've finished reading through the chapters. Overall they look really good. See comments above for changes.

I think renaming the chapter something like Quality Control in Metagenomics would be appropriate.