ecohealthalliance / open-rvfcast

Wellcome Open RVFCast project repository
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RSA spatial aggregation #81

Closed emmamendelsohn closed 8 months ago

emmamendelsohn commented 9 months ago

This PR adds the function aggregate_augmented_data_by_adm() to summarize the augmented data by administrative districts. For now it only runs a subset of model_dates_selected because the augmented data is incomplete -- we still need to add the static layers, immunity and outbreak layers. It takes about 1 minute per branch on my machine. At minimum we need the outbreak layer to run a dummy model.