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ecr05 / MSM_HOCR

Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
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config_file for neonatal data #27

Closed trichtu closed 1 month ago

trichtu commented 1 month ago

Hi, in the README.txt, there says a config_strain_STRAIN_SPHERE_shear20_within file when using MSM for neonatal data, but I could not find it? Could you tell where it is?

trichtu commented 1 month ago

And infant template you provide in the https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-atlas-bozek/ could not be downloaded. It is forbidden when download it. Could you fix this link?

ecr05 commented 1 month ago

It's this one https://github.com/ecr05/dHCP_template_alignment/blob/master/configs/config_subject_to_40_week_template_3rd_release

And this template https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-template/

Slava can help you access the templates Sent from Outlook for Androidhttps://aka.ms/AAb9ysg

From: trichtu @.> Sent: Sunday, August 25, 2024 5:54:30 AM To: ecr05/MSM_HOCR @.> Cc: Subscribed @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

And infant template you provide in the https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-atlas-bozek/ could not be downloaded. It is forbidden when download it. Could you fix this link?

— Reply to this email directly, view it on GitHubhttps://github.com/ecr05/MSM_HOCR/issues/27#issuecomment-2308654887, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AD7GXPDPHTAKTRWZVXGNLNTZTFPQNAVCNFSM6AAAAABNCGJO72VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBYGY2TIOBYG4. You are receiving this because you are subscribed to this thread.Message ID: @.***>

ecr05 commented 1 month ago

Hi Emma - not sure I can help here, I have the same problem with link when trying to access it. Who is maintaining this resource, Imperial? Perhaps, Jelena/Daniel will be a person to ask what’s wrong with this.

Best Wishes, Slava

On 25 Aug 2024, at 16:23, Emma Robinson @.***> wrote:

It's this one https://github.com/ecr05/dHCP_template_alignment/blob/master/configs/config_subject_to_40_week_template_3rd_release

And this template https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-template/

Slava can help you access the templates Sent from Outlook for Androidhttps://aka.ms/AAb9ysg

From: trichtu @.> Sent: Sunday, August 25, 2024 5:54:30 AM To: ecr05/MSM_HOCR @.> Cc: Subscribed @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

And infant template you provide in the https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-atlas-bozek/ could not be downloaded. It is forbidden when download it. Could you fix this link?

— Reply to this email directly, view it on GitHubhttps://github.com/ecr05/MSM_HOCR/issues/27#issuecomment-2308654887, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AD7GXPDPHTAKTRWZVXGNLNTZTFPQNAVCNFSM6AAAAABNCGJO72VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBYGY2TIOBYG4. You are receiving this because you are subscribed to this thread.Message ID: @.***>

ecr05 commented 1 month ago

Yourong, Kaili

Can you send Logan's template to this user.

Tbh there's maybe no point in public sharing as the template needs to change with the next data release (learning-generated surfaces).

Emma

Sent from Outlook for Androidhttps://aka.ms/AAb9ysg

From: Slava Karolis @.> Sent: Monday, August 26, 2024 8:40:14 AM To: Emma Robinson @.> Cc: ecr05/MSM_HOCR @.>; ecr05/MSM_HOCR @.>; Subscribed @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

Hi Emma - not sure I can help here, I have the same problem with link when trying to access it. Who is maintaining this resource, Imperial? Perhaps, Jelena/Daniel will be a person to ask what’s wrong with this.

Best Wishes, Slava

On 25 Aug 2024, at 16:23, Emma Robinson @.***> wrote:

It's this one https://github.com/ecr05/dHCP_template_alignment/blob/master/configs/config_subject_to_40_week_template_3rd_release

And this template https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-template/

Slava can help you access the templates Sent from Outlook for Androidhttps://aka.ms/AAb9ysg

From: trichtu @.> Sent: Sunday, August 25, 2024 5:54:30 AM To: ecr05/MSM_HOCR @.> Cc: Subscribed @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

And infant template you provide in the https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-atlas-bozek/ could not be downloaded. It is forbidden when download it. Could you fix this link?

— Reply to this email directly, view it on GitHubhttps://github.com/ecr05/MSM_HOCR/issues/27#issuecomment-2308654887, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AD7GXPDPHTAKTRWZVXGNLNTZTFPQNAVCNFSM6AAAAABNCGJO72VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBYGY2TIOBYG4. You are receiving this because you are subscribed to this thread.Message ID: @.***>

trichtu commented 1 month ago

Thanks for helping the connections. If there is any template could be shared, please send to my email: trichtu.gmail.com Best, Liang

ecr05 commented 1 month ago

Hi All,

The link of dhcp templates:https://github.com/metrics-lab/CorticalAsymmetry/tree/main/Templates/dHCP

Hope it can help.

BW Kaili

From: Emma Robinson @.> Sent: 26 August 2024 09:34 To: Slava Karolis @.> Cc: ecr05/MSM_HOCR @.>; ecr05/MSM_HOCR @.>; Subscribed @.>; Yourong Guo @.>; Kaili Liang @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

Yourong, Kaili

Can you send Logan's template to this user.

Tbh there's maybe no point in public sharing as the template needs to change with the next data release (learning-generated surfaces).

Emma

Sent from Outlook for Androidhttps://aka.ms/AAb9ysg

From: Slava Karolis @.> Sent: Monday, August 26, 2024 8:40:14 AM To: Emma Robinson @.> Cc: ecr05/MSM_HOCR @.>; ecr05/MSM_HOCR @.>; Subscribed @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

Hi Emma - not sure I can help here, I have the same problem with link when trying to access it. Who is maintaining this resource, Imperial? Perhaps, Jelena/Daniel will be a person to ask what’s wrong with this.

Best Wishes, Slava

On 25 Aug 2024, at 16:23, Emma Robinson @.***> wrote:

It's this one https://github.com/ecr05/dHCP_template_alignment/blob/master/configs/config_subject_to_40_week_template_3rd_release

And this template https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-template/

Slava can help you access the templates Sent from Outlook for Androidhttps://aka.ms/AAb9ysg

From: trichtu @.> Sent: Sunday, August 25, 2024 5:54:30 AM To: ecr05/MSM_HOCR @.> Cc: Subscribed @.***> Subject: Re: [ecr05/MSM_HOCR] config_file for neonatal data (Issue #27)

And infant template you provide in the https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-atlas-bozek/ could not be downloaded. It is forbidden when download it. Could you fix this link?

— Reply to this email directly, view it on GitHubhttps://github.com/ecr05/MSM_HOCR/issues/27#issuecomment-2308654887, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AD7GXPDPHTAKTRWZVXGNLNTZTFPQNAVCNFSM6AAAAABNCGJO72VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBYGY2TIOBYG4. You are receiving this because you are subscribed to this thread.Message ID: @.***>

trichtu commented 1 month ago

Thank you very much. It does help.