Closed ashlinrichardson closed 3 years ago
ashlinrichardson
commented
3 years ago This could be accomplished by Density Estimation as @kmoselle indicated ss in Fig. 3 of: "Measurability of the epidemic reproduction number in data-driven contact networks" Quan-Hui Liu a,b,c , Marco Ajelli c,d , Alberto Aleta e,f , Stefano Merler d , Yamir Moreno e,f,g , and Alessandro Vespignani c,g,1 a
kmoselle
commented
3 years ago I believe density is just what we are looking for.
But as I speculate - would it be possible to locate longitudinal outliers, e.g., trials that start in one high probability region and then end up in a low probability region where most of the trials that start in a high probability region don't go???
If we were greedy we would want the density gradient and then have the capacity to play a movie where each of the trials that contribute towards that density depiction get highlighted so that we could use our eyeballs to catch the outliers or atypical cases and then look at them more closely, e.g., look at the transmission trees for a select set./Ken
From: Ashlin Richardson notifications@github.com Sent: March 7, 2021 4:04 PM To: ecsendmail/MultiverseContagion Cc: Moselle, Ken; Mention Subject: Re: [ecsendmail/MultiverseContagion] add variation bounds to ensemble chart (#17)
This could be accomplished by Density Estimation as @kmosellehttps://github.com/kmoselle indicated ss in Fig. 3 of: "Measurability of the epidemic reproduction number in data-driven contact networks" Quan-Hui Liu a,b,c , Marco Ajelli c,d , Alberto Aleta e,f , Stefano Merler d , Yamir Moreno e,f,g , and Alessandro Vespignani c,g,1 a
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/ecsendmail/MultiverseContagion/issues/17#issuecomment-792380360, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ADUHS63DSOJUXXVLMSH53BDTCQH7XANCNFSM4YQV2IHA.
ecsendmail
commented
3 years ago How would you assign high and low probabilities? Do you mean frequency?
Ernie
On Mon, Mar 8, 2021, 08:51 kmoselle, notifications@github.com wrote:
I believe density is just what we are looking for.
But as I speculate - would it be possible to locate longitudinal outliers, e.g., trials that start in one high probability region and then end up in a low probability region where most of the trials that start in a high probability region don't go???
If we were greedy we would want the density gradient and then have the capacity to play a movie where each of the trials that contribute towards that density depiction get highlighted so that we could use our eyeballs to catch the outliers or atypical cases and then look at them more closely, e.g., look at the transmission trees for a select set./Ken
From: Ashlin Richardson notifications@github.com Sent: March 7, 2021 4:04 PM To: ecsendmail/MultiverseContagion Cc: Moselle, Ken; Mention Subject: Re: [ecsendmail/MultiverseContagion] add variation bounds to ensemble chart (#17)
This could be accomplished by Density Estimation as @kmosellehttps://github.com/kmoselle indicated ss in Fig. 3 of: "Measurability of the epidemic reproduction number in data-driven contact networks" Quan-Hui Liu a,b,c , Marco Ajelli c,d , Alberto Aleta e,f , Stefano Merler d , Yamir Moreno e,f,g , and Alessandro Vespignani c,g,1 a
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub< https://github.com/ecsendmail/MultiverseContagion/issues/17#issuecomment-792380360>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/ADUHS63DSOJUXXVLMSH53BDTCQH7XANCNFSM4YQV2IHA
.
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ecsendmail
commented
3 years ago If you repeat 1000 trials would you get the same envelope?
On Mon, Mar 8, 2021, 08:51 kmoselle, notifications@github.com wrote:
I believe density is just what we are looking for.
But as I speculate - would it be possible to locate longitudinal outliers, e.g., trials that start in one high probability region and then end up in a low probability region where most of the trials that start in a high probability region don't go???
If we were greedy we would want the density gradient and then have the capacity to play a movie where each of the trials that contribute towards that density depiction get highlighted so that we could use our eyeballs to catch the outliers or atypical cases and then look at them more closely, e.g., look at the transmission trees for a select set./Ken
From: Ashlin Richardson notifications@github.com Sent: March 7, 2021 4:04 PM To: ecsendmail/MultiverseContagion Cc: Moselle, Ken; Mention Subject: Re: [ecsendmail/MultiverseContagion] add variation bounds to ensemble chart (#17)
This could be accomplished by Density Estimation as @kmosellehttps://github.com/kmoselle indicated ss in Fig. 3 of: "Measurability of the epidemic reproduction number in data-driven contact networks" Quan-Hui Liu a,b,c , Marco Ajelli c,d , Alberto Aleta e,f , Stefano Merler d , Yamir Moreno e,f,g , and Alessandro Vespignani c,g,1 a
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub< https://github.com/ecsendmail/MultiverseContagion/issues/17#issuecomment-792380360>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/ADUHS63DSOJUXXVLMSH53BDTCQH7XANCNFSM4YQV2IHA
.
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ecsendmail/MultiverseContagion/issues/17#issuecomment-792895100, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADGAKCSBZA3KBCRD5N4P25DTCT6BNANCNFSM4YQV2IHA .
still need this as well as envelopes?