Open mrcaleb01 opened 4 months ago
Hi,
The --splice-type argument is available in the 0.3.5a pre-release. Let me know if you can access and install directly from GitHub here: https://github.com/ed-lau/jcast/releases/tag/v0.3.5a. If not I can also upload to PyPI for pip.
E
Hi Edward,
Thanks for your response. I tried installing this new version in a new conda environment. I downloaded the tar.gz file and used $ pip install jcast-0.3.5a0.tar.gz - to install.
But unfortunately, jcast still doesn't recognize the "-s SE" argument.
I'd be glad if you could upload it to PyPI for pip or suggest possible ways for me to run this.
Thanks
Hi Edward,
I have been able to install the new version. I initially ran into some issues with my conda environment. Thanks a lot for your assistance.
Best, C
Hi. I am trying to run JCAST 0.3.5 but I want to run the analysis for one specific rMATS output. I attempt to use the --splice_type optional argument but the output I get says "unrecognized arguments".
Could you please look into this for me?
Side note: I installed JCAST using "$ pip install jcast" in Ubuntu 22.04.3 terminal