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edamontology / edam-bioimaging

Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
https://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Classes
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Interaction level of segmentation #14

Open matuskalas opened 5 years ago

matuskalas commented 5 years ago

Now in alpha05, we removed Interactive segmentation, because interaction level is a field in BISE/BIII.

Note: Not deprecated but drastically purged to dev0, as that's the way we do it in alpha.

Opening this issue as a reference for future (as comments in WebProtégé aren't available once a concept is removed).

Considerations to keep for future:

  1. BISE/BIII has interaction level for the whole component|collection, but needs a level of concrete implemented operations.

  2. It might be that segmentation is the only exception where modelling interaction in EDAM could make sense.

  3. Which interaction levels? i. automatic ii. semi-automatic = inetractive? iii. manual (still computer-supported implementation of course)