edamontology / edam-bioimaging

Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
https://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Classes
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IDs when adding concepts in WebProtege VERSUS Comments in WebProtege #7

Open matuskalas opened 6 years ago

matuskalas commented 6 years ago

alpha02 collaborative dev

IDs had to be changed manually when merging to git, as the WebProtege project was set up unoptimally.

Problem: When afterwards merged back to WebProtege, would loose Comments for re-ID-ed concepts.

Thus are all comments kept in old, frozen "live" alpha02_dev at https://webprotege.stanford.edu/#projects/046821ee-2307-4d3f-b4a7-dececc665b92/edit/Classes

Was after alpha02

FOR EDITORS NB.: (CHANGE FROM PREVIOUS!) When adding a new concept, you MUST fill in an appropriate ID a.k.a. IRI a.k.a. URI of the new concept. In order to support future traceabilty, it MUST have the following form:

http://edamontology.org/<sub-ontology>___<underscored-label>

where <sub-ontology> is one of data, format, operation, topic

and <underscored-label> is the first short label you give to the concept, with spaces replaced by underscores ('_').

The 3 underscores ('___') are necessary in this temporary agile setting, to mark the next 3rd alpha version alpha03.

Example:
http://edamontology.org/topic___New_ultra_super_nanoscopy

Sorry for a complication and thank you for understanding!!!

That didn't really work well

Still problems:

From alpha03

IDs should be automatically assigned as http://edamontology.org/znew____<underscored-label>. Number of 'N' underscores corresponds to the alpha'N'_dev version.

N.B. !!DANGEROUS!!: Thus Comments would be kept only for: